[DATALAD RUNCMD] Compute UM_2/sub-0050410

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_2/sub-0050410/anat/sub-0050410_T1w.nii.gz"
 ],
 "outputs": [
  "UM_2/sub-0050410"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_2/sub-0050410/label/catROI_sub-0050410_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/w6/47/MD5E-s58461--3a78903b1869b12d2b3a6385d132dad6.mat/MD5E-s58461--3a78903b1869b12d2b3a6385d132dad6.mat

UM_2/sub-0050410/label/catROI_sub-0050410_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/WP/Jg/MD5E-s188940--2ae5881c054c07465bd85a7f3fd130ce.xml/MD5E-s188940--2ae5881c054c07465bd85a7f3fd130ce.xml

UM_2/sub-0050410/label/catROIs_sub-0050410_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/mk/Jq/MD5E-s120163--6330ab0dd319957cca8bf31a8e676bfc.mat/MD5E-s120163--6330ab0dd319957cca8bf31a8e676bfc.mat

UM_2/sub-0050410/label/catROIs_sub-0050410_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/x4/w0/MD5E-s332131--7736cda889294d16a21535454df19fd2.xml/MD5E-s332131--7736cda889294d16a21535454df19fd2.xml

UM_2/sub-0050410/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050410_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_2/sub-0050410/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050410_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J5/44/MD5E-s135275--0286b2672d4ff9cfb51196eb0e276410.nii.gz/MD5E-s135275--0286b2672d4ff9cfb51196eb0e276410.nii.gz

UM_2/sub-0050410/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050410_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_2/sub-0050410/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050410_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vv/Px/MD5E-s151279--d95a9a93e60d20d36e99382bf7f06167.nii.gz/MD5E-s151279--d95a9a93e60d20d36e99382bf7f06167.nii.gz

UM_2/sub-0050410/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050410_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_2/sub-0050410/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050410_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pW/2F/MD5E-s208906--367de5a12772795079936acda247164b.nii.gz/MD5E-s208906--367de5a12772795079936acda247164b.nii.gz

UM_2/sub-0050410/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050410_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_2/sub-0050410/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050410_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zq/K6/MD5E-s230537--dcf517f2f6f878525e8b54622d924d06.nii.gz/MD5E-s230537--dcf517f2f6f878525e8b54622d924d06.nii.gz

UM_2/sub-0050410/mri/Tian_Subcortex_S2_7T_sub-0050410_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_2/sub-0050410/mri/Tian_Subcortex_S2_7T_sub-0050410_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wk/mZ/MD5E-s17092--34625af61a745a70e57c4c37f5e32597.nii.gz/MD5E-s17092--34625af61a745a70e57c4c37f5e32597.nii.gz

UM_2/sub-0050410/mri/aal3_sub-0050410_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

UM_2/sub-0050410/mri/aal3_sub-0050410_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050410/mri/anatomy3_sub-0050410_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UM_2/sub-0050410/mri/anatomy3_sub-0050410_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zz/XJ/MD5E-s106476--7bd34564ce36e614c5b855983956873f.nii.gz/MD5E-s106476--7bd34564ce36e614c5b855983956873f.nii.gz

UM_2/sub-0050410/mri/anon_misub-0050410_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050410/mri/anon_msub-0050410_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XV/22/MD5E-s5782147--561621de15e2d1be9fd27aa0d560103e.nii.gz/MD5E-s5782147--561621de15e2d1be9fd27aa0d560103e.nii.gz

UM_2/sub-0050410/mri/cat_sub-0050410_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4j/3v/MD5E-s77389--a3cf7f442909537619abddbb23b3b2c0.nii.gz/MD5E-s77389--a3cf7f442909537619abddbb23b3b2c0.nii.gz

UM_2/sub-0050410/mri/cobra_sub-0050410_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_2/sub-0050410/mri/cobra_sub-0050410_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050410/mri/hammers_sub-0050410_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_2/sub-0050410/mri/hammers_sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/ibsr_sub-0050410_T1w.csv

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+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

UM_2/sub-0050410/mri/ibsr_sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/it_sub-0050410_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/7K/K8/MD5E-s283--17d5bd7e356c8603cce2a2bbbd7f47dc.mat/MD5E-s283--17d5bd7e356c8603cce2a2bbbd7f47dc.mat

UM_2/sub-0050410/mri/it_sub-0050410_T1w_rigid_reorient.mat

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UM_2/sub-0050410/mri/iy_sub-0050410_T1w.nii.gz

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+../../../.git/annex/objects/2m/1p/MD5E-s33117371--f08f1f4127fc3a937f58faf7ec3b9e41.nii.gz/MD5E-s33117371--f08f1f4127fc3a937f58faf7ec3b9e41.nii.gz

UM_2/sub-0050410/mri/julichbrain_sub-0050410_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_2/sub-0050410/mri/julichbrain_sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/lpba40_sub-0050410_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UM_2/sub-0050410/mri/lpba40_sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/m0wp1sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/m0wp2sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/m0wp3sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/mori_sub-0050410_T1w.csv

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UM_2/sub-0050410/mri/mori_sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/mwp1sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/mwp2sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/mwp3sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/neuromorphometrics_sub-0050410_T1w.csv

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UM_2/sub-0050410/mri/neuromorphometrics_sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/p0sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/p1sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/p2sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/p3sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/rp1sub-0050410_T1w_affine.nii.gz

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UM_2/sub-0050410/mri/rp2sub-0050410_T1w_affine.nii.gz

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UM_2/sub-0050410/mri/rp3sub-0050410_T1w_affine.nii.gz

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UM_2/sub-0050410/mri/t_sub-0050410_T1w_affine_reorient.mat

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UM_2/sub-0050410/mri/t_sub-0050410_T1w_rigid_reorient.mat

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UM_2/sub-0050410/mri/thalamus_sub-0050410_T1w.csv

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UM_2/sub-0050410/mri/thalamus_sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/wj_sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/wmisub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/wmsub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/wp0sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/wp1sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/wp2sub-0050410_T1w.nii.gz

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UM_2/sub-0050410/mri/wp3sub-0050410_T1w.nii.gz

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