[DATALAD RUNCMD] Compute UM_1/sub-0050305

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050305/anat/sub-0050305_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050305"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050305/label/catROI_sub-0050305_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/g0/22/MD5E-s61407--b674360c33847a0c4b1c8c2a3cb4d9b3.mat/MD5E-s61407--b674360c33847a0c4b1c8c2a3cb4d9b3.mat

UM_1/sub-0050305/label/catROI_sub-0050305_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/jP/xJ/MD5E-s188842--c77266a257754de345cc5169c799300c.xml/MD5E-s188842--c77266a257754de345cc5169c799300c.xml

UM_1/sub-0050305/label/catROIs_sub-0050305_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/kk/5m/MD5E-s120323--557b880ad5895373e6a06f0d33244fc0.mat/MD5E-s120323--557b880ad5895373e6a06f0d33244fc0.mat

UM_1/sub-0050305/label/catROIs_sub-0050305_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/1X/55/MD5E-s332091--393f09d6ac6260896a679f496169eec5.xml/MD5E-s332091--393f09d6ac6260896a679f496169eec5.xml

UM_1/sub-0050305/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050305_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050305/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050305_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5z/KJ/MD5E-s158275--72b0b0139c432af85c0f99200bc93f7d.nii.gz/MD5E-s158275--72b0b0139c432af85c0f99200bc93f7d.nii.gz

UM_1/sub-0050305/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050305_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050305/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050305_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MZ/pG/MD5E-s178382--aabc44ee75c89baae091a633ab9a2c6b.nii.gz/MD5E-s178382--aabc44ee75c89baae091a633ab9a2c6b.nii.gz

UM_1/sub-0050305/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050305_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050305/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050305_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wj/J7/MD5E-s225112--c807c7c391a90c571a15fbd873b0442a.nii.gz/MD5E-s225112--c807c7c391a90c571a15fbd873b0442a.nii.gz

UM_1/sub-0050305/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050305_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050305/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050305_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5M/V7/MD5E-s251146--30416a88e7cbf62cd5d3cee36d0abfd2.nii.gz/MD5E-s251146--30416a88e7cbf62cd5d3cee36d0abfd2.nii.gz

UM_1/sub-0050305/mri/Tian_Subcortex_S2_7T_sub-0050305_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050305/mri/Tian_Subcortex_S2_7T_sub-0050305_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wg/3x/MD5E-s20669--cb80429ec0242902e0444f0b740e88bf.nii.gz/MD5E-s20669--cb80429ec0242902e0444f0b740e88bf.nii.gz

UM_1/sub-0050305/mri/aal3_sub-0050305_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

UM_1/sub-0050305/mri/aal3_sub-0050305_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K7/MJ/MD5E-s177585--9c8af552d82ef98239f54649f7e54465.nii.gz/MD5E-s177585--9c8af552d82ef98239f54649f7e54465.nii.gz

UM_1/sub-0050305/mri/anatomy3_sub-0050305_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UM_1/sub-0050305/mri/anatomy3_sub-0050305_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j2/Mp/MD5E-s126180--21b66a0409b00d2c17bceea214aeb585.nii.gz/MD5E-s126180--21b66a0409b00d2c17bceea214aeb585.nii.gz

UM_1/sub-0050305/mri/anon_misub-0050305_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050305/mri/anon_msub-0050305_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wF/Vm/MD5E-s4979212--fe25eb823994e886a93e7406e7071516.nii.gz/MD5E-s4979212--fe25eb823994e886a93e7406e7071516.nii.gz

UM_1/sub-0050305/mri/cat_sub-0050305_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1Z/jF/MD5E-s92524--1e3ed8cef755904bffe6ecb9160b2849.nii.gz/MD5E-s92524--1e3ed8cef755904bffe6ecb9160b2849.nii.gz

UM_1/sub-0050305/mri/cobra_sub-0050305_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050305/mri/cobra_sub-0050305_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pK/qZ/MD5E-s42301--bacd5919bf487900e16c88e9eee2a81b.nii.gz/MD5E-s42301--bacd5919bf487900e16c88e9eee2a81b.nii.gz

UM_1/sub-0050305/mri/hammers_sub-0050305_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050305/mri/hammers_sub-0050305_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q6/53/MD5E-s137626--6eae5c576060bf6977dcbaf559b01bef.nii.gz/MD5E-s137626--6eae5c576060bf6977dcbaf559b01bef.nii.gz

UM_1/sub-0050305/mri/ibsr_sub-0050305_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050305/mri/ibsr_sub-0050305_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pz/Jz/MD5E-s143702--cd90da601788917b5e3ca67c516fedac.nii.gz/MD5E-s143702--cd90da601788917b5e3ca67c516fedac.nii.gz

UM_1/sub-0050305/mri/it_sub-0050305_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/F0/Zw/MD5E-s282--b7eed5d3e4a119c57d3c9f59039f861d.mat/MD5E-s282--b7eed5d3e4a119c57d3c9f59039f861d.mat

UM_1/sub-0050305/mri/it_sub-0050305_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/63/9k/MD5E-s283--79785b2b029661881ceee986de4e871c.mat/MD5E-s283--79785b2b029661881ceee986de4e871c.mat

UM_1/sub-0050305/mri/iy_sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/julichbrain_sub-0050305_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_1/sub-0050305/mri/julichbrain_sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/lpba40_sub-0050305_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UM_1/sub-0050305/mri/lpba40_sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/m0wp1sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/m0wp2sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/m0wp3sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/mori_sub-0050305_T1w.csv

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UM_1/sub-0050305/mri/mori_sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/mwp1sub-0050305_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050305/mri/mwp2sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/mwp3sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/neuromorphometrics_sub-0050305_T1w.csv

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UM_1/sub-0050305/mri/neuromorphometrics_sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/p0sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/p1sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/p2sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/p3sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/rp1sub-0050305_T1w_affine.nii.gz

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UM_1/sub-0050305/mri/rp2sub-0050305_T1w_affine.nii.gz

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UM_1/sub-0050305/mri/rp3sub-0050305_T1w_affine.nii.gz

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UM_1/sub-0050305/mri/t_sub-0050305_T1w_affine_reorient.mat

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UM_1/sub-0050305/mri/t_sub-0050305_T1w_rigid_reorient.mat

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UM_1/sub-0050305/mri/thalamus_sub-0050305_T1w.csv

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UM_1/sub-0050305/mri/thalamus_sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/wj_sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/wmisub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/wmsub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/wp0sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/wp1sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/wp2sub-0050305_T1w.nii.gz

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UM_1/sub-0050305/mri/wp3sub-0050305_T1w.nii.gz

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