[DATALAD RUNCMD] Compute UM_1/sub-0050326

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050326/anat/sub-0050326_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050326"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050326/label/catROI_sub-0050326_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/m2/fv/MD5E-s61454--08181f9e3fb53c717c25b93f8d02aa69.mat/MD5E-s61454--08181f9e3fb53c717c25b93f8d02aa69.mat

UM_1/sub-0050326/label/catROI_sub-0050326_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/p3/vP/MD5E-s189050--bc02dbd539e48f9a3eb6127328fbbe2e.xml/MD5E-s189050--bc02dbd539e48f9a3eb6127328fbbe2e.xml

UM_1/sub-0050326/label/catROIs_sub-0050326_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZJ/6W/MD5E-s120231--6fe3961340d55789d130a327c864b3a7.mat/MD5E-s120231--6fe3961340d55789d130a327c864b3a7.mat

UM_1/sub-0050326/label/catROIs_sub-0050326_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/89/4z/MD5E-s332149--08dfcdf99f1dd8556bb2416cd473814a.xml/MD5E-s332149--08dfcdf99f1dd8556bb2416cd473814a.xml

UM_1/sub-0050326/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050326_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050326/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050326_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q7/9m/MD5E-s159615--a582df9cc336022e5c8a394dcc8fae13.nii.gz/MD5E-s159615--a582df9cc336022e5c8a394dcc8fae13.nii.gz

UM_1/sub-0050326/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050326_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050326/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050326_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WP/9Q/MD5E-s179972--7588be72e611046fb7ebe4de347e4ed1.nii.gz/MD5E-s179972--7588be72e611046fb7ebe4de347e4ed1.nii.gz

UM_1/sub-0050326/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050326_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050326/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050326_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0Q/Jk/MD5E-s226344--e8d69c878a9d93b995436c476f8b17e0.nii.gz/MD5E-s226344--e8d69c878a9d93b995436c476f8b17e0.nii.gz

UM_1/sub-0050326/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050326_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050326/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050326_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gw/85/MD5E-s251881--31424b8904acd0b5a65cf54ddfe1406d.nii.gz/MD5E-s251881--31424b8904acd0b5a65cf54ddfe1406d.nii.gz

UM_1/sub-0050326/mri/Tian_Subcortex_S2_7T_sub-0050326_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050326/mri/Tian_Subcortex_S2_7T_sub-0050326_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3m/04/MD5E-s19945--6db7d726034b42c1996917510320091a.nii.gz/MD5E-s19945--6db7d726034b42c1996917510320091a.nii.gz

UM_1/sub-0050326/mri/aal3_sub-0050326_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050326/mri/aal3_sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/anatomy3_sub-0050326_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050326/mri/anatomy3_sub-0050326_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050326/mri/anon_misub-0050326_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050326/mri/anon_msub-0050326_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qF/0v/MD5E-s5745024--ba82e56951acec7c5aa8811e9c3d9e5a.nii.gz/MD5E-s5745024--ba82e56951acec7c5aa8811e9c3d9e5a.nii.gz

UM_1/sub-0050326/mri/cat_sub-0050326_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050326/mri/cobra_sub-0050326_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050326/mri/cobra_sub-0050326_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050326/mri/hammers_sub-0050326_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050326/mri/hammers_sub-0050326_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050326/mri/ibsr_sub-0050326_T1w.csv

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UM_1/sub-0050326/mri/ibsr_sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/it_sub-0050326_T1w_affine_reorient.mat

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UM_1/sub-0050326/mri/it_sub-0050326_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/jK/KQ/MD5E-s284--7cfb609cb40749cdcbd948df55a0e2d6.mat/MD5E-s284--7cfb609cb40749cdcbd948df55a0e2d6.mat

UM_1/sub-0050326/mri/iy_sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/julichbrain_sub-0050326_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050326/mri/julichbrain_sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/lpba40_sub-0050326_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050326/mri/lpba40_sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/m0wp1sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/m0wp2sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/m0wp3sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/mori_sub-0050326_T1w.csv

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UM_1/sub-0050326/mri/mori_sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/mwp1sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/mwp2sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/mwp3sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/neuromorphometrics_sub-0050326_T1w.csv

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UM_1/sub-0050326/mri/neuromorphometrics_sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/p0sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/p1sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/p2sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/p3sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/rp1sub-0050326_T1w_affine.nii.gz

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UM_1/sub-0050326/mri/rp2sub-0050326_T1w_affine.nii.gz

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UM_1/sub-0050326/mri/rp3sub-0050326_T1w_affine.nii.gz

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UM_1/sub-0050326/mri/t_sub-0050326_T1w_affine_reorient.mat

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UM_1/sub-0050326/mri/t_sub-0050326_T1w_rigid_reorient.mat

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UM_1/sub-0050326/mri/thalamus_sub-0050326_T1w.csv

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UM_1/sub-0050326/mri/thalamus_sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/wj_sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/wmisub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/wmsub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/wp0sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/wp1sub-0050326_T1w.nii.gz

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UM_1/sub-0050326/mri/wp2sub-0050326_T1w.nii.gz

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