[DATALAD RUNCMD] Compute USM/sub-0050479

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050479/anat/sub-0050479_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050479"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050479/label/catROI_sub-0050479_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/3j/wj/MD5E-s61457--b947326937d3c82367c05ad232a12b8a.mat/MD5E-s61457--b947326937d3c82367c05ad232a12b8a.mat

USM/sub-0050479/label/catROI_sub-0050479_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/3z/1z/MD5E-s188955--98ff65c42dfe3d62220fef4663539d85.xml/MD5E-s188955--98ff65c42dfe3d62220fef4663539d85.xml

USM/sub-0050479/label/catROIs_sub-0050479_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gp/g0/MD5E-s119948--0d683698e11f99b397d1f3528c18fa11.mat/MD5E-s119948--0d683698e11f99b397d1f3528c18fa11.mat

USM/sub-0050479/label/catROIs_sub-0050479_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/g3/QX/MD5E-s332129--4cc4f96ac9217b26ea199d8eb7505836.xml/MD5E-s332129--4cc4f96ac9217b26ea199d8eb7505836.xml

USM/sub-0050479/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050479_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050479/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j6/68/MD5E-s512651--2bd1ff31b53ddc60d09901caaba965cd.nii.gz/MD5E-s512651--2bd1ff31b53ddc60d09901caaba965cd.nii.gz

USM/sub-0050479/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050479_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050479/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z3/7j/MD5E-s575459--f5e2b6b898e60df8e59b898b2fa84a65.nii.gz/MD5E-s575459--f5e2b6b898e60df8e59b898b2fa84a65.nii.gz

USM/sub-0050479/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050479_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050479/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qj/jM/MD5E-s807080--7a314fc3db017c896eea86b2fdeba8d6.nii.gz/MD5E-s807080--7a314fc3db017c896eea86b2fdeba8d6.nii.gz

USM/sub-0050479/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050479_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050479/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/44/4p/MD5E-s891254--2b06c3a3f9dfe198a742aca3d5b15665.nii.gz/MD5E-s891254--2b06c3a3f9dfe198a742aca3d5b15665.nii.gz

USM/sub-0050479/mri/Tian_Subcortex_S2_7T_sub-0050479_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050479/mri/Tian_Subcortex_S2_7T_sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gz/ZQ/MD5E-s75587--f38f10184d75ff6a0c2edf96ab8240f1.nii.gz/MD5E-s75587--f38f10184d75ff6a0c2edf96ab8240f1.nii.gz

USM/sub-0050479/mri/aal3_sub-0050479_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050479/mri/aal3_sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KZ/WJ/MD5E-s574315--1cb396f6692a906f9093f55b642f36d9.nii.gz/MD5E-s574315--1cb396f6692a906f9093f55b642f36d9.nii.gz

USM/sub-0050479/mri/anatomy3_sub-0050479_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050479/mri/anatomy3_sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/59/GK/MD5E-s422371--3d9e09c993c9af8f7d1fc5ceacbf791a.nii.gz/MD5E-s422371--3d9e09c993c9af8f7d1fc5ceacbf791a.nii.gz

USM/sub-0050479/mri/anon_misub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6k/Pk/MD5E-s20865822--5a96a0f6b749f5921da474ce998e63b2.nii.gz/MD5E-s20865822--5a96a0f6b749f5921da474ce998e63b2.nii.gz

USM/sub-0050479/mri/anon_msub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zp/Fz/MD5E-s36279898--73726d2ef652fb9ea58f7095f2c2df43.nii.gz/MD5E-s36279898--73726d2ef652fb9ea58f7095f2c2df43.nii.gz

USM/sub-0050479/mri/cat_sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/41/W7/MD5E-s257563--db63c55812b2683191927246ef6a4fbe.nii.gz/MD5E-s257563--db63c55812b2683191927246ef6a4fbe.nii.gz

USM/sub-0050479/mri/cobra_sub-0050479_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050479/mri/cobra_sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/33/j9/MD5E-s147808--23156261779cd125260991675dfc5b43.nii.gz/MD5E-s147808--23156261779cd125260991675dfc5b43.nii.gz

USM/sub-0050479/mri/hammers_sub-0050479_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050479/mri/hammers_sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0k/Kq/MD5E-s452663--9fd533b2deff9d49efac0fc6ca1c870b.nii.gz/MD5E-s452663--9fd533b2deff9d49efac0fc6ca1c870b.nii.gz

USM/sub-0050479/mri/ibsr_sub-0050479_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050479/mri/ibsr_sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VK/F7/MD5E-s489079--e7cf65c5a5978cfe224f709f025ac9dc.nii.gz/MD5E-s489079--e7cf65c5a5978cfe224f709f025ac9dc.nii.gz

USM/sub-0050479/mri/it_sub-0050479_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/GQ/Mz/MD5E-s283--f98cb3301e029f4efaef0575f5899626.mat/MD5E-s283--f98cb3301e029f4efaef0575f5899626.mat

USM/sub-0050479/mri/it_sub-0050479_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/v6/x8/MD5E-s284--0aa7b8a56b575929c0354c105b679c92.mat/MD5E-s284--0aa7b8a56b575929c0354c105b679c92.mat

USM/sub-0050479/mri/iy_sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gz/4M/MD5E-s183784584--dd33e82fbd5013efd5519408e5921c64.nii.gz/MD5E-s183784584--dd33e82fbd5013efd5519408e5921c64.nii.gz

USM/sub-0050479/mri/julichbrain_sub-0050479_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050479/mri/julichbrain_sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P6/3w/MD5E-s615907--463bbf0f3af1fff4bf2931bc5ff47296.nii.gz/MD5E-s615907--463bbf0f3af1fff4bf2931bc5ff47296.nii.gz

USM/sub-0050479/mri/lpba40_sub-0050479_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050479/mri/lpba40_sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4F/21/MD5E-s443714--5d70cc366ec5455400532e6256e20a46.nii.gz/MD5E-s443714--5d70cc366ec5455400532e6256e20a46.nii.gz

USM/sub-0050479/mri/m0wp1sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050479/mri/m0wp2sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050479/mri/m0wp3sub-0050479_T1w.nii.gz

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USM/sub-0050479/mri/mori_sub-0050479_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

USM/sub-0050479/mri/mori_sub-0050479_T1w.nii.gz

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USM/sub-0050479/mri/mwp1sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050479/mri/mwp2sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050479/mri/mwp3sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050479/mri/neuromorphometrics_sub-0050479_T1w.csv

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USM/sub-0050479/mri/neuromorphometrics_sub-0050479_T1w.nii.gz

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USM/sub-0050479/mri/p0sub-0050479_T1w.nii.gz

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USM/sub-0050479/mri/p1sub-0050479_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050479/mri/p2sub-0050479_T1w.nii.gz

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USM/sub-0050479/mri/p3sub-0050479_T1w.nii.gz

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USM/sub-0050479/mri/rp1sub-0050479_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050479/mri/rp2sub-0050479_T1w_affine.nii.gz

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USM/sub-0050479/mri/rp3sub-0050479_T1w_affine.nii.gz

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USM/sub-0050479/mri/t_sub-0050479_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/M2/6J/MD5E-s283--b2f38bcae3d859a8da0da8296b8e6c8c.mat/MD5E-s283--b2f38bcae3d859a8da0da8296b8e6c8c.mat

USM/sub-0050479/mri/t_sub-0050479_T1w_rigid_reorient.mat

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USM/sub-0050479/mri/thalamus_sub-0050479_T1w.csv

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USM/sub-0050479/mri/thalamus_sub-0050479_T1w.nii.gz

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USM/sub-0050479/mri/wj_sub-0050479_T1w.nii.gz

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USM/sub-0050479/mri/wmisub-0050479_T1w.nii.gz

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USM/sub-0050479/mri/wmsub-0050479_T1w.nii.gz

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USM/sub-0050479/mri/wp0sub-0050479_T1w.nii.gz

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USM/sub-0050479/mri/wp1sub-0050479_T1w.nii.gz

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USM/sub-0050479/mri/wp2sub-0050479_T1w.nii.gz

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USM/sub-0050479/mri/wp3sub-0050479_T1w.nii.gz

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