[DATALAD RUNCMD] Compute Yale/sub-0050571

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Yale/sub-0050571/anat/sub-0050571_T1w.nii.gz"
 ],
 "outputs": [
  "Yale/sub-0050571"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Yale/sub-0050571/label/catROI_sub-0050571_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gj/Q1/MD5E-s57833--e76644eac5ea80c020e9beb50eb121d1.mat/MD5E-s57833--e76644eac5ea80c020e9beb50eb121d1.mat

Yale/sub-0050571/label/catROI_sub-0050571_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/JF/0G/MD5E-s188998--d177ed28fb9429fa0a1537d856e05dd7.xml/MD5E-s188998--d177ed28fb9429fa0a1537d856e05dd7.xml

Yale/sub-0050571/label/catROIs_sub-0050571_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/1z/VK/MD5E-s120116--e2b8a1def2ac7c13fff213ad3732e059.mat/MD5E-s120116--e2b8a1def2ac7c13fff213ad3732e059.mat

Yale/sub-0050571/label/catROIs_sub-0050571_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mz/X9/MD5E-s332121--116146bf960c0097a54aa2d784a73b27.xml/MD5E-s332121--116146bf960c0097a54aa2d784a73b27.xml

Yale/sub-0050571/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050571_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Yale/sub-0050571/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050571_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0W/WF/MD5E-s169842--77bd953906f038a167033f527ad07940.nii.gz/MD5E-s169842--77bd953906f038a167033f527ad07940.nii.gz

Yale/sub-0050571/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050571_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Yale/sub-0050571/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050571_T1w.nii.gz

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+../../../.git/annex/objects/mm/vw/MD5E-s189853--d434f0c958fef1c601e87f66de8d73f2.nii.gz/MD5E-s189853--d434f0c958fef1c601e87f66de8d73f2.nii.gz

Yale/sub-0050571/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050571_T1w.csv

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+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Yale/sub-0050571/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050571_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4P/PQ/MD5E-s257486--1378664416131ac7405cdf09536d7fd7.nii.gz/MD5E-s257486--1378664416131ac7405cdf09536d7fd7.nii.gz

Yale/sub-0050571/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050571_T1w.csv

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+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Yale/sub-0050571/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050571_T1w.nii.gz

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+../../../.git/annex/objects/mg/pG/MD5E-s285160--f44d76892c4b1315e1b0a04b3d625c7e.nii.gz/MD5E-s285160--f44d76892c4b1315e1b0a04b3d625c7e.nii.gz

Yale/sub-0050571/mri/Tian_Subcortex_S2_7T_sub-0050571_T1w.csv

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+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Yale/sub-0050571/mri/Tian_Subcortex_S2_7T_sub-0050571_T1w.nii.gz

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+../../../.git/annex/objects/GX/M7/MD5E-s24067--cbb6c4feb5026b0744a6074326babb5a.nii.gz/MD5E-s24067--cbb6c4feb5026b0744a6074326babb5a.nii.gz

Yale/sub-0050571/mri/aal3_sub-0050571_T1w.csv

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Yale/sub-0050571/mri/aal3_sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/anatomy3_sub-0050571_T1w.csv

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Yale/sub-0050571/mri/anatomy3_sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/anon_misub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/anon_msub-0050571_T1w.nii.gz

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+../../../.git/annex/objects/fK/JW/MD5E-s10068015--b688846ff8bb0a8cc69ca79567d20e4c.nii.gz/MD5E-s10068015--b688846ff8bb0a8cc69ca79567d20e4c.nii.gz

Yale/sub-0050571/mri/cat_sub-0050571_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p8/ZZ/MD5E-s97249--3c9d84e90ddaed726a04a4f8fbeb1517.nii.gz/MD5E-s97249--3c9d84e90ddaed726a04a4f8fbeb1517.nii.gz

Yale/sub-0050571/mri/cobra_sub-0050571_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Yale/sub-0050571/mri/cobra_sub-0050571_T1w.nii.gz

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+../../../.git/annex/objects/wW/0Q/MD5E-s48999--68d83a2f5bfac782c262c7a1f3169e57.nii.gz/MD5E-s48999--68d83a2f5bfac782c262c7a1f3169e57.nii.gz

Yale/sub-0050571/mri/hammers_sub-0050571_T1w.csv

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+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Yale/sub-0050571/mri/hammers_sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/ibsr_sub-0050571_T1w.csv

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Yale/sub-0050571/mri/ibsr_sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/it_sub-0050571_T1w_affine_reorient.mat

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Yale/sub-0050571/mri/it_sub-0050571_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/P7/G8/MD5E-s284--2213eb8bed592ef7c5631b9d42b4f413.mat/MD5E-s284--2213eb8bed592ef7c5631b9d42b4f413.mat

Yale/sub-0050571/mri/iy_sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/julichbrain_sub-0050571_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Yale/sub-0050571/mri/julichbrain_sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/lpba40_sub-0050571_T1w.csv

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Yale/sub-0050571/mri/lpba40_sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/m0wp1sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/m0wp2sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/m0wp3sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/mori_sub-0050571_T1w.csv

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Yale/sub-0050571/mri/mori_sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/mwp1sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/mwp2sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/mwp3sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/neuromorphometrics_sub-0050571_T1w.csv

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Yale/sub-0050571/mri/neuromorphometrics_sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/p0sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/p1sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/p2sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/p3sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/rp1sub-0050571_T1w_affine.nii.gz

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Yale/sub-0050571/mri/rp2sub-0050571_T1w_affine.nii.gz

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Yale/sub-0050571/mri/rp3sub-0050571_T1w_affine.nii.gz

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Yale/sub-0050571/mri/t_sub-0050571_T1w_affine_reorient.mat

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Yale/sub-0050571/mri/t_sub-0050571_T1w_rigid_reorient.mat

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Yale/sub-0050571/mri/thalamus_sub-0050571_T1w.csv

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Yale/sub-0050571/mri/thalamus_sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/wj_sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/wmisub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/wmsub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/wp0sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/wp1sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/wp2sub-0050571_T1w.nii.gz

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Yale/sub-0050571/mri/wp3sub-0050571_T1w.nii.gz

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