[DATALAD RUNCMD] Compute USM/sub-0050488

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050488/anat/sub-0050488_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050488"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050488/label/catROI_sub-0050488_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/V9/kj/MD5E-s61384--56e7d75f736a67fa205de5af2eeacfe1.mat/MD5E-s61384--56e7d75f736a67fa205de5af2eeacfe1.mat

USM/sub-0050488/label/catROI_sub-0050488_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/fQ/7x/MD5E-s188952--d69c29cd11a16ff25c9d306613d3a2ef.xml/MD5E-s188952--d69c29cd11a16ff25c9d306613d3a2ef.xml

USM/sub-0050488/label/catROIs_sub-0050488_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/f6/q2/MD5E-s120004--06c0930e30fcacf0a7d7b2d3c1f57dae.mat/MD5E-s120004--06c0930e30fcacf0a7d7b2d3c1f57dae.mat

USM/sub-0050488/label/catROIs_sub-0050488_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gm/pQ/MD5E-s332147--b1a4f98dd0c1b736068754fc28bbbfa9.xml/MD5E-s332147--b1a4f98dd0c1b736068754fc28bbbfa9.xml

USM/sub-0050488/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050488_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050488/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050488_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fv/KQ/MD5E-s482540--e8a5245e8e51383c07bd9dda4612f519.nii.gz/MD5E-s482540--e8a5245e8e51383c07bd9dda4612f519.nii.gz

USM/sub-0050488/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050488_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050488/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050488_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kx/G8/MD5E-s540050--c034e3780363004049848197cf36fae4.nii.gz/MD5E-s540050--c034e3780363004049848197cf36fae4.nii.gz

USM/sub-0050488/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050488_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050488/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050488_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xx/0x/MD5E-s759065--2993c29f7be6b93e72af5c7e54f29971.nii.gz/MD5E-s759065--2993c29f7be6b93e72af5c7e54f29971.nii.gz

USM/sub-0050488/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050488_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050488/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050488_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2W/PQ/MD5E-s836818--091ddab6fd043f0f040b94e6f7c51164.nii.gz/MD5E-s836818--091ddab6fd043f0f040b94e6f7c51164.nii.gz

USM/sub-0050488/mri/Tian_Subcortex_S2_7T_sub-0050488_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050488/mri/Tian_Subcortex_S2_7T_sub-0050488_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qg/09/MD5E-s73334--4fefdd9b88bb1186077b1df824e3ce3f.nii.gz/MD5E-s73334--4fefdd9b88bb1186077b1df824e3ce3f.nii.gz

USM/sub-0050488/mri/aal3_sub-0050488_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050488/mri/aal3_sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/anatomy3_sub-0050488_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050488/mri/anatomy3_sub-0050488_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9f/38/MD5E-s404078--f06d4c225049fc76493c0cc9abcf3f33.nii.gz/MD5E-s404078--f06d4c225049fc76493c0cc9abcf3f33.nii.gz

USM/sub-0050488/mri/anon_misub-0050488_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wg/9q/MD5E-s20273579--c36864412ba5e8d79e574bd188bcc0dd.nii.gz/MD5E-s20273579--c36864412ba5e8d79e574bd188bcc0dd.nii.gz

USM/sub-0050488/mri/anon_msub-0050488_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pp/qX/MD5E-s35732790--66d0c106ec21f3ea61966e03d404b8c6.nii.gz/MD5E-s35732790--66d0c106ec21f3ea61966e03d404b8c6.nii.gz

USM/sub-0050488/mri/cat_sub-0050488_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mm/8k/MD5E-s249284--9fb098dbfae5812631489e88fe706a78.nii.gz/MD5E-s249284--9fb098dbfae5812631489e88fe706a78.nii.gz

USM/sub-0050488/mri/cobra_sub-0050488_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050488/mri/cobra_sub-0050488_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050488/mri/hammers_sub-0050488_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050488/mri/hammers_sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/ibsr_sub-0050488_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050488/mri/ibsr_sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/it_sub-0050488_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/5j/WV/MD5E-s284--f502ae7efb7071bd5199992e1e627e78.mat/MD5E-s284--f502ae7efb7071bd5199992e1e627e78.mat

USM/sub-0050488/mri/it_sub-0050488_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/mg/jp/MD5E-s281--3d51b125716a64f1ab6aa0a0ad782af7.mat/MD5E-s281--3d51b125716a64f1ab6aa0a0ad782af7.mat

USM/sub-0050488/mri/iy_sub-0050488_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z0/2x/MD5E-s170813689--191e16fe47c68555072b906634ba778d.nii.gz/MD5E-s170813689--191e16fe47c68555072b906634ba778d.nii.gz

USM/sub-0050488/mri/julichbrain_sub-0050488_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050488/mri/julichbrain_sub-0050488_T1w.nii.gz

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+../../../.git/annex/objects/z0/Z1/MD5E-s579655--1d59098a8eabc2e6e93176e0429e466e.nii.gz/MD5E-s579655--1d59098a8eabc2e6e93176e0429e466e.nii.gz

USM/sub-0050488/mri/lpba40_sub-0050488_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050488/mri/lpba40_sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/m0wp1sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/m0wp2sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/m0wp3sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/mori_sub-0050488_T1w.csv

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USM/sub-0050488/mri/mori_sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/mwp1sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/mwp2sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/mwp3sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/neuromorphometrics_sub-0050488_T1w.csv

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USM/sub-0050488/mri/neuromorphometrics_sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/p0sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/p1sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/p2sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/p3sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/rp1sub-0050488_T1w_affine.nii.gz

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USM/sub-0050488/mri/rp2sub-0050488_T1w_affine.nii.gz

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USM/sub-0050488/mri/rp3sub-0050488_T1w_affine.nii.gz

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USM/sub-0050488/mri/t_sub-0050488_T1w_affine_reorient.mat

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USM/sub-0050488/mri/t_sub-0050488_T1w_rigid_reorient.mat

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USM/sub-0050488/mri/thalamus_sub-0050488_T1w.csv

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USM/sub-0050488/mri/thalamus_sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/wj_sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/wmisub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/wmsub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/wp0sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/wp1sub-0050488_T1w.nii.gz

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USM/sub-0050488/mri/wp2sub-0050488_T1w.nii.gz

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