[DATALAD RUNCMD] Compute USM/sub-0050495

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050495/anat/sub-0050495_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050495"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050495/label/catROI_sub-0050495_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/9Z/v3/MD5E-s61395--7351e01e2e5e8fbb8478587fb8978405.mat/MD5E-s61395--7351e01e2e5e8fbb8478587fb8978405.mat

USM/sub-0050495/label/catROI_sub-0050495_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/VW/86/MD5E-s189088--09c826796a5890a412a4a0c8f6d10ad5.xml/MD5E-s189088--09c826796a5890a412a4a0c8f6d10ad5.xml

USM/sub-0050495/label/catROIs_sub-0050495_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/J6/g1/MD5E-s120091--00cbdc2fa133b19c81b79ea3e36bba5d.mat/MD5E-s120091--00cbdc2fa133b19c81b79ea3e36bba5d.mat

USM/sub-0050495/label/catROIs_sub-0050495_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qv/gp/MD5E-s332077--4a1ad9eec19b5db09471292ef8f47113.xml/MD5E-s332077--4a1ad9eec19b5db09471292ef8f47113.xml

USM/sub-0050495/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050495_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050495/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VF/Pp/MD5E-s474789--f686eb178270ea9bc04cd5b8a89287d5.nii.gz/MD5E-s474789--f686eb178270ea9bc04cd5b8a89287d5.nii.gz

USM/sub-0050495/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050495_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050495/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/03/kw/MD5E-s528800--fe33e5b5cdde21da73072e06f1ef0552.nii.gz/MD5E-s528800--fe33e5b5cdde21da73072e06f1ef0552.nii.gz

USM/sub-0050495/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050495_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050495/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5z/0g/MD5E-s740734--bfb84ae5fbfe1e505ba1e19387cdd4d0.nii.gz/MD5E-s740734--bfb84ae5fbfe1e505ba1e19387cdd4d0.nii.gz

USM/sub-0050495/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050495_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050495/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J2/17/MD5E-s818210--991cca6aeedc091cc6ea42cb672a0373.nii.gz/MD5E-s818210--991cca6aeedc091cc6ea42cb672a0373.nii.gz

USM/sub-0050495/mri/Tian_Subcortex_S2_7T_sub-0050495_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050495/mri/Tian_Subcortex_S2_7T_sub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5g/WQ/MD5E-s74022--161e8f4cf141cc174571c821ad5d9d98.nii.gz/MD5E-s74022--161e8f4cf141cc174571c821ad5d9d98.nii.gz

USM/sub-0050495/mri/aal3_sub-0050495_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050495/mri/aal3_sub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kz/Vg/MD5E-s529910--c411c6d5d4ec8cbca680290971f4a967.nii.gz/MD5E-s529910--c411c6d5d4ec8cbca680290971f4a967.nii.gz

USM/sub-0050495/mri/anatomy3_sub-0050495_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050495/mri/anatomy3_sub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1m/Mx/MD5E-s394059--ef4ab4a4929eabddaf55977cf344c878.nii.gz/MD5E-s394059--ef4ab4a4929eabddaf55977cf344c878.nii.gz

USM/sub-0050495/mri/anon_misub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z9/kG/MD5E-s19688818--f3185728a29b000e476246a0457f89d4.nii.gz/MD5E-s19688818--f3185728a29b000e476246a0457f89d4.nii.gz

USM/sub-0050495/mri/anon_msub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7X/K5/MD5E-s32128359--ba01e495a622f92ec326541fc35af35a.nii.gz/MD5E-s32128359--ba01e495a622f92ec326541fc35af35a.nii.gz

USM/sub-0050495/mri/cat_sub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2m/Jw/MD5E-s234830--48643b2b61528895ef4383b738f118a2.nii.gz/MD5E-s234830--48643b2b61528895ef4383b738f118a2.nii.gz

USM/sub-0050495/mri/cobra_sub-0050495_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050495/mri/cobra_sub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pm/QJ/MD5E-s139946--f50e59228bbbe2ece3cacbbb13712e9d.nii.gz/MD5E-s139946--f50e59228bbbe2ece3cacbbb13712e9d.nii.gz

USM/sub-0050495/mri/hammers_sub-0050495_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050495/mri/hammers_sub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mq/9Q/MD5E-s415229--6b48f46c7bd1b2fd86fc2aac586376ac.nii.gz/MD5E-s415229--6b48f46c7bd1b2fd86fc2aac586376ac.nii.gz

USM/sub-0050495/mri/ibsr_sub-0050495_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050495/mri/ibsr_sub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/36/QJ/MD5E-s448267--782ce056573db801ef1ff2c3990389fc.nii.gz/MD5E-s448267--782ce056573db801ef1ff2c3990389fc.nii.gz

USM/sub-0050495/mri/it_sub-0050495_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jk/xV/MD5E-s283--bf3b9a36f700b3abd2943fed6461a96f.mat/MD5E-s283--bf3b9a36f700b3abd2943fed6461a96f.mat

USM/sub-0050495/mri/it_sub-0050495_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/FF/xP/MD5E-s283--018adce0071828489321b25c193a49f1.mat/MD5E-s283--018adce0071828489321b25c193a49f1.mat

USM/sub-0050495/mri/iy_sub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x6/Vf/MD5E-s155194320--a371cc710fd2762788bb52611c15c7bc.nii.gz/MD5E-s155194320--a371cc710fd2762788bb52611c15c7bc.nii.gz

USM/sub-0050495/mri/julichbrain_sub-0050495_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050495/mri/julichbrain_sub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kz/1j/MD5E-s568124--360c42ad4a67eb4d8cb70441719298c0.nii.gz/MD5E-s568124--360c42ad4a67eb4d8cb70441719298c0.nii.gz

USM/sub-0050495/mri/lpba40_sub-0050495_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050495/mri/lpba40_sub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050495/mri/m0wp1sub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050495/mri/m0wp2sub-0050495_T1w.nii.gz

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USM/sub-0050495/mri/m0wp3sub-0050495_T1w.nii.gz

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USM/sub-0050495/mri/mori_sub-0050495_T1w.csv

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USM/sub-0050495/mri/mori_sub-0050495_T1w.nii.gz

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USM/sub-0050495/mri/mwp1sub-0050495_T1w.nii.gz

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USM/sub-0050495/mri/mwp2sub-0050495_T1w.nii.gz

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USM/sub-0050495/mri/mwp3sub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m0/4K/MD5E-s2366563--b582353eee80742a750d0c40a1638157.nii.gz/MD5E-s2366563--b582353eee80742a750d0c40a1638157.nii.gz

USM/sub-0050495/mri/neuromorphometrics_sub-0050495_T1w.csv

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USM/sub-0050495/mri/neuromorphometrics_sub-0050495_T1w.nii.gz

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USM/sub-0050495/mri/p0sub-0050495_T1w.nii.gz

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USM/sub-0050495/mri/p1sub-0050495_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050495/mri/p2sub-0050495_T1w.nii.gz

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USM/sub-0050495/mri/p3sub-0050495_T1w.nii.gz

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USM/sub-0050495/mri/rp1sub-0050495_T1w_affine.nii.gz

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USM/sub-0050495/mri/rp2sub-0050495_T1w_affine.nii.gz

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USM/sub-0050495/mri/rp3sub-0050495_T1w_affine.nii.gz

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USM/sub-0050495/mri/t_sub-0050495_T1w_affine_reorient.mat

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USM/sub-0050495/mri/t_sub-0050495_T1w_rigid_reorient.mat

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USM/sub-0050495/mri/thalamus_sub-0050495_T1w.csv

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USM/sub-0050495/mri/thalamus_sub-0050495_T1w.nii.gz

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USM/sub-0050495/mri/wj_sub-0050495_T1w.nii.gz

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USM/sub-0050495/mri/wmisub-0050495_T1w.nii.gz

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USM/sub-0050495/mri/wmsub-0050495_T1w.nii.gz

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USM/sub-0050495/mri/wp0sub-0050495_T1w.nii.gz

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USM/sub-0050495/mri/wp1sub-0050495_T1w.nii.gz

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USM/sub-0050495/mri/wp2sub-0050495_T1w.nii.gz

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USM/sub-0050495/mri/wp3sub-0050495_T1w.nii.gz

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