[DATALAD RUNCMD] Compute Olin/sub-0050135

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Olin/sub-0050135/anat/sub-0050135_T1w.nii.gz"
 ],
 "outputs": [
  "Olin/sub-0050135"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Olin/sub-0050135/label/catROI_sub-0050135_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/57/9g/MD5E-s61322--8df08c1608e4383e83d85120f325dda3.mat/MD5E-s61322--8df08c1608e4383e83d85120f325dda3.mat

Olin/sub-0050135/label/catROI_sub-0050135_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/wZ/z6/MD5E-s188542--4983a90f968dbdddabfb2a217b2fa4d6.xml/MD5E-s188542--4983a90f968dbdddabfb2a217b2fa4d6.xml

Olin/sub-0050135/label/catROIs_sub-0050135_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/qm/mK/MD5E-s120242--033f80cffff1cea90883bc7511a6eac8.mat/MD5E-s120242--033f80cffff1cea90883bc7511a6eac8.mat

Olin/sub-0050135/label/catROIs_sub-0050135_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/XJ/1F/MD5E-s332125--c2215474e3bb09ba8c856ed05a12dbf8.xml/MD5E-s332125--c2215474e3bb09ba8c856ed05a12dbf8.xml

Olin/sub-0050135/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050135_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Olin/sub-0050135/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050135_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0w/K9/MD5E-s188053--4cdd85b9ec71b32fd4f9e14f86c16e43.nii.gz/MD5E-s188053--4cdd85b9ec71b32fd4f9e14f86c16e43.nii.gz

Olin/sub-0050135/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050135_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Olin/sub-0050135/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050135_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9M/p5/MD5E-s210213--de85b8253cea5078d1c785184a6205c5.nii.gz/MD5E-s210213--de85b8253cea5078d1c785184a6205c5.nii.gz

Olin/sub-0050135/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050135_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Olin/sub-0050135/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050135_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050135/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050135_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Olin/sub-0050135/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050135_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vm/zk/MD5E-s303455--7bdc45f69c78eb2c9ca53887bb004c35.nii.gz/MD5E-s303455--7bdc45f69c78eb2c9ca53887bb004c35.nii.gz

Olin/sub-0050135/mri/Tian_Subcortex_S2_7T_sub-0050135_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Olin/sub-0050135/mri/Tian_Subcortex_S2_7T_sub-0050135_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fx/pW/MD5E-s25015--0e1476c0421cb67ee5c85ebd36061c11.nii.gz/MD5E-s25015--0e1476c0421cb67ee5c85ebd36061c11.nii.gz

Olin/sub-0050135/mri/aal3_sub-0050135_T1w.csv

@@ -0,0 +1 @@
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Olin/sub-0050135/mri/aal3_sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/anatomy3_sub-0050135_T1w.csv

@@ -0,0 +1 @@
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Olin/sub-0050135/mri/anatomy3_sub-0050135_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050135/mri/anon_misub-0050135_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1W/Jw/MD5E-s4628173--8befb00f427a81434b0894c42425037f.nii.gz/MD5E-s4628173--8befb00f427a81434b0894c42425037f.nii.gz

Olin/sub-0050135/mri/anon_msub-0050135_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zG/zw/MD5E-s10285629--b876401c84dbb024b39e98040002e6df.nii.gz/MD5E-s10285629--b876401c84dbb024b39e98040002e6df.nii.gz

Olin/sub-0050135/mri/cat_sub-0050135_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K6/gm/MD5E-s109167--5333b8afb705d8c4f1e25db7cded48ba.nii.gz/MD5E-s109167--5333b8afb705d8c4f1e25db7cded48ba.nii.gz

Olin/sub-0050135/mri/cobra_sub-0050135_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Olin/sub-0050135/mri/cobra_sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/hammers_sub-0050135_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Olin/sub-0050135/mri/hammers_sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/ibsr_sub-0050135_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Olin/sub-0050135/mri/ibsr_sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/it_sub-0050135_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xx/pv/MD5E-s282--5654d095ea13ca0b40f99743be2186e9.mat/MD5E-s282--5654d095ea13ca0b40f99743be2186e9.mat

Olin/sub-0050135/mri/it_sub-0050135_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/XV/kK/MD5E-s282--f2ac58ca3c1a724a0e09e5646b022fb9.mat/MD5E-s282--f2ac58ca3c1a724a0e09e5646b022fb9.mat

Olin/sub-0050135/mri/iy_sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/julichbrain_sub-0050135_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Olin/sub-0050135/mri/julichbrain_sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/lpba40_sub-0050135_T1w.csv

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Olin/sub-0050135/mri/lpba40_sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/m0wp1sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/m0wp2sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/m0wp3sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/mori_sub-0050135_T1w.csv

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Olin/sub-0050135/mri/mori_sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/mwp1sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/mwp2sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/mwp3sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/neuromorphometrics_sub-0050135_T1w.csv

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Olin/sub-0050135/mri/neuromorphometrics_sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/p0sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/p1sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/p2sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/p3sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/rp1sub-0050135_T1w_affine.nii.gz

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Olin/sub-0050135/mri/rp2sub-0050135_T1w_affine.nii.gz

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Olin/sub-0050135/mri/rp3sub-0050135_T1w_affine.nii.gz

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Olin/sub-0050135/mri/t_sub-0050135_T1w_affine_reorient.mat

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Olin/sub-0050135/mri/t_sub-0050135_T1w_rigid_reorient.mat

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Olin/sub-0050135/mri/thalamus_sub-0050135_T1w.csv

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Olin/sub-0050135/mri/thalamus_sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/wj_sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/wmisub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/wmsub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/wp0sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/wp1sub-0050135_T1w.nii.gz

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Olin/sub-0050135/mri/wp2sub-0050135_T1w.nii.gz

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