[DATALAD RUNCMD] Compute Trinity/sub-0050255

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Trinity/sub-0050255/anat/sub-0050255_T1w.nii.gz"
 ],
 "outputs": [
  "Trinity/sub-0050255"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Trinity/sub-0050255/label/catROI_sub-0050255_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/7F/9w/MD5E-s61292--a288870336ba7b7b0edf54649a675c56.mat/MD5E-s61292--a288870336ba7b7b0edf54649a675c56.mat

Trinity/sub-0050255/label/catROI_sub-0050255_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/jk/47/MD5E-s188436--352bbd8e2fa824f2e0e6d5f1c8467f6c.xml/MD5E-s188436--352bbd8e2fa824f2e0e6d5f1c8467f6c.xml

Trinity/sub-0050255/label/catROIs_sub-0050255_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/jF/8q/MD5E-s119943--40230ff7b258c3e938569094e6b1904c.mat/MD5E-s119943--40230ff7b258c3e938569094e6b1904c.mat

Trinity/sub-0050255/label/catROIs_sub-0050255_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/0k/zK/MD5E-s332098--c83c639416b5389170c3d668bd5c5685.xml/MD5E-s332098--c83c639416b5389170c3d668bd5c5685.xml

Trinity/sub-0050255/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050255_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Trinity/sub-0050255/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050255_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z8/0k/MD5E-s184210--4161362862fc300f3cce03fbb9437463.nii.gz/MD5E-s184210--4161362862fc300f3cce03fbb9437463.nii.gz

Trinity/sub-0050255/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050255_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Trinity/sub-0050255/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050255_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6g/gj/MD5E-s208781--bcabcccaabf01daba6812e4757b19fef.nii.gz/MD5E-s208781--bcabcccaabf01daba6812e4757b19fef.nii.gz

Trinity/sub-0050255/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050255_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Trinity/sub-0050255/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050255_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F9/mF/MD5E-s280067--041400785d45d12b4b4d265d0e8a317e.nii.gz/MD5E-s280067--041400785d45d12b4b4d265d0e8a317e.nii.gz

Trinity/sub-0050255/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050255_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Trinity/sub-0050255/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050255_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/80/MD5E-s312608--f0187002d95ee888266ce67f7299b315.nii.gz/MD5E-s312608--f0187002d95ee888266ce67f7299b315.nii.gz

Trinity/sub-0050255/mri/Tian_Subcortex_S2_7T_sub-0050255_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Trinity/sub-0050255/mri/Tian_Subcortex_S2_7T_sub-0050255_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3J/Gp/MD5E-s24240--e07166ee9a3c6122f261898a033f900e.nii.gz/MD5E-s24240--e07166ee9a3c6122f261898a033f900e.nii.gz

Trinity/sub-0050255/mri/aal3_sub-0050255_T1w.csv

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Trinity/sub-0050255/mri/aal3_sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/anatomy3_sub-0050255_T1w.csv

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Trinity/sub-0050255/mri/anatomy3_sub-0050255_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K5/fP/MD5E-s150775--a45512acb6a71a65fcb3cd86aff5e249.nii.gz/MD5E-s150775--a45512acb6a71a65fcb3cd86aff5e249.nii.gz

Trinity/sub-0050255/mri/anon_misub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/anon_msub-0050255_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jv/mV/MD5E-s7986144--c48ff99e085544d942fc31676f508849.nii.gz/MD5E-s7986144--c48ff99e085544d942fc31676f508849.nii.gz

Trinity/sub-0050255/mri/cat_sub-0050255_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gk/Kw/MD5E-s106627--5a6ea589fce5418d164d91b283eb64a3.nii.gz/MD5E-s106627--5a6ea589fce5418d164d91b283eb64a3.nii.gz

Trinity/sub-0050255/mri/cobra_sub-0050255_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Trinity/sub-0050255/mri/cobra_sub-0050255_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f7/FV/MD5E-s49867--8d21cda092ba02323d05065bd0254e80.nii.gz/MD5E-s49867--8d21cda092ba02323d05065bd0254e80.nii.gz

Trinity/sub-0050255/mri/hammers_sub-0050255_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Trinity/sub-0050255/mri/hammers_sub-0050255_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050255/mri/ibsr_sub-0050255_T1w.csv

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Trinity/sub-0050255/mri/ibsr_sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/it_sub-0050255_T1w_affine_reorient.mat

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Trinity/sub-0050255/mri/it_sub-0050255_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/99/p9/MD5E-s283--26a7e8d71a80d1417b73d67f1c01f548.mat/MD5E-s283--26a7e8d71a80d1417b73d67f1c01f548.mat

Trinity/sub-0050255/mri/iy_sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/julichbrain_sub-0050255_T1w.csv

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Trinity/sub-0050255/mri/julichbrain_sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/lpba40_sub-0050255_T1w.csv

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Trinity/sub-0050255/mri/lpba40_sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/m0wp1sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/m0wp2sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/m0wp3sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/mori_sub-0050255_T1w.csv

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Trinity/sub-0050255/mri/mori_sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/mwp1sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/mwp2sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/mwp3sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/neuromorphometrics_sub-0050255_T1w.csv

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Trinity/sub-0050255/mri/neuromorphometrics_sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/p0sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/p1sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/p2sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/p3sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/rp1sub-0050255_T1w_affine.nii.gz

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Trinity/sub-0050255/mri/rp2sub-0050255_T1w_affine.nii.gz

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Trinity/sub-0050255/mri/rp3sub-0050255_T1w_affine.nii.gz

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Trinity/sub-0050255/mri/t_sub-0050255_T1w_affine_reorient.mat

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Trinity/sub-0050255/mri/t_sub-0050255_T1w_rigid_reorient.mat

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Trinity/sub-0050255/mri/thalamus_sub-0050255_T1w.csv

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Trinity/sub-0050255/mri/thalamus_sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/wj_sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/wmisub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/wmsub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/wp0sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/wp1sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/wp2sub-0050255_T1w.nii.gz

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Trinity/sub-0050255/mri/wp3sub-0050255_T1w.nii.gz

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