[DATALAD RUNCMD] Compute SBL/sub-0051567

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/SBL/sub-0051567/anat/sub-0051567_T1w.nii.gz"
 ],
 "outputs": [
  "SBL/sub-0051567"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SBL/sub-0051567/label/catROI_sub-0051567_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/22/5W/MD5E-s61384--5b246ec975d9258be2b8e4f7d803214d.mat/MD5E-s61384--5b246ec975d9258be2b8e4f7d803214d.mat

SBL/sub-0051567/label/catROI_sub-0051567_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/Zx/MD5E-s189103--57f6b8eb38675d47479deab0af3acd61.xml/MD5E-s189103--57f6b8eb38675d47479deab0af3acd61.xml

SBL/sub-0051567/label/catROIs_sub-0051567_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/jv/3q/MD5E-s120132--ea774bc37ce7481781bc87d47a5eda0c.mat/MD5E-s120132--ea774bc37ce7481781bc87d47a5eda0c.mat

SBL/sub-0051567/label/catROIs_sub-0051567_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/pk/Kz/MD5E-s332224--379e53c4ab9319e810353690c2f7e52e.xml/MD5E-s332224--379e53c4ab9319e810353690c2f7e52e.xml

SBL/sub-0051567/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051567_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SBL/sub-0051567/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xm/jP/MD5E-s198557--78331751049e1af5881f79578e2d7d08.nii.gz/MD5E-s198557--78331751049e1af5881f79578e2d7d08.nii.gz

SBL/sub-0051567/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051567_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SBL/sub-0051567/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p2/7f/MD5E-s221277--7e65ce5b306282c7cf0f4b754fd52a13.nii.gz/MD5E-s221277--7e65ce5b306282c7cf0f4b754fd52a13.nii.gz

SBL/sub-0051567/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051567_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SBL/sub-0051567/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fv/fg/MD5E-s280962--22a33820f0538dcc985998984bfbe738.nii.gz/MD5E-s280962--22a33820f0538dcc985998984bfbe738.nii.gz

SBL/sub-0051567/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051567_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SBL/sub-0051567/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wz/0p/MD5E-s311511--9b4ccfce2b2d2e17482dac74a31b806f.nii.gz/MD5E-s311511--9b4ccfce2b2d2e17482dac74a31b806f.nii.gz

SBL/sub-0051567/mri/Tian_Subcortex_S2_7T_sub-0051567_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SBL/sub-0051567/mri/Tian_Subcortex_S2_7T_sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jz/8J/MD5E-s25993--8f4ee9da2cba8a0999be056797c45a68.nii.gz/MD5E-s25993--8f4ee9da2cba8a0999be056797c45a68.nii.gz

SBL/sub-0051567/mri/aal3_sub-0051567_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SBL/sub-0051567/mri/aal3_sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vG/Xw/MD5E-s221250--5f5906d3e282a5b0bd9c92e58e00e144.nii.gz/MD5E-s221250--5f5906d3e282a5b0bd9c92e58e00e144.nii.gz

SBL/sub-0051567/mri/anatomy3_sub-0051567_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SBL/sub-0051567/mri/anatomy3_sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6Q/2q/MD5E-s160206--5b676f0a19947b2795ed74afb6745618.nii.gz/MD5E-s160206--5b676f0a19947b2795ed74afb6745618.nii.gz

SBL/sub-0051567/mri/anon_misub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FP/FZ/MD5E-s5456940--fe5ce1717fc6fbcbd4dea58a9bf0d0e2.nii.gz/MD5E-s5456940--fe5ce1717fc6fbcbd4dea58a9bf0d0e2.nii.gz

SBL/sub-0051567/mri/anon_msub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p9/j5/MD5E-s11295336--e5699047a01548bff537f02a02fc4283.nii.gz/MD5E-s11295336--e5699047a01548bff537f02a02fc4283.nii.gz

SBL/sub-0051567/mri/cat_sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KG/j7/MD5E-s130387--45d43bcaaaabb9e5b4cfb2d2b37f534f.nii.gz/MD5E-s130387--45d43bcaaaabb9e5b4cfb2d2b37f534f.nii.gz

SBL/sub-0051567/mri/cobra_sub-0051567_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SBL/sub-0051567/mri/cobra_sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/59/1p/MD5E-s55199--aadcee9c720a1cfddf167e37ea1b3a7b.nii.gz/MD5E-s55199--aadcee9c720a1cfddf167e37ea1b3a7b.nii.gz

SBL/sub-0051567/mri/hammers_sub-0051567_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SBL/sub-0051567/mri/hammers_sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z4/Kx/MD5E-s172938--762384a79b7c62d71c07c569c69459bd.nii.gz/MD5E-s172938--762384a79b7c62d71c07c569c69459bd.nii.gz

SBL/sub-0051567/mri/ibsr_sub-0051567_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SBL/sub-0051567/mri/ibsr_sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JJ/9Z/MD5E-s180678--41e36f59a529e13c98656c7ebada35aa.nii.gz/MD5E-s180678--41e36f59a529e13c98656c7ebada35aa.nii.gz

SBL/sub-0051567/mri/it_sub-0051567_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/7k/Zg/MD5E-s284--541716768b71d82e1dc52b76a98554e8.mat/MD5E-s284--541716768b71d82e1dc52b76a98554e8.mat

SBL/sub-0051567/mri/it_sub-0051567_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/6x/z3/MD5E-s284--8343e78f572fa48cb59d6fc63cd2de0e.mat/MD5E-s284--8343e78f572fa48cb59d6fc63cd2de0e.mat

SBL/sub-0051567/mri/iy_sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0j/ZF/MD5E-s48756754--2ab0aa62d37f2f7c1a8111a31450a27b.nii.gz/MD5E-s48756754--2ab0aa62d37f2f7c1a8111a31450a27b.nii.gz

SBL/sub-0051567/mri/julichbrain_sub-0051567_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SBL/sub-0051567/mri/julichbrain_sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pW/XM/MD5E-s236858--ca83ca30c039841a32755e92b5744ccf.nii.gz/MD5E-s236858--ca83ca30c039841a32755e92b5744ccf.nii.gz

SBL/sub-0051567/mri/lpba40_sub-0051567_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SBL/sub-0051567/mri/lpba40_sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MP/3m/MD5E-s171470--5329d7efc68a343c181f4da184ba1636.nii.gz/MD5E-s171470--5329d7efc68a343c181f4da184ba1636.nii.gz

SBL/sub-0051567/mri/m0wp1sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/07/JZ/MD5E-s2596726--59dab685cf9c01c0ef459dab5c5c241a.nii.gz/MD5E-s2596726--59dab685cf9c01c0ef459dab5c5c241a.nii.gz

SBL/sub-0051567/mri/m0wp2sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051567/mri/m0wp3sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051567/mri/mori_sub-0051567_T1w.csv

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SBL/sub-0051567/mri/mori_sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q9/jG/MD5E-s201699--d76480063c9304093d957c612c7e6213.nii.gz/MD5E-s201699--d76480063c9304093d957c612c7e6213.nii.gz

SBL/sub-0051567/mri/mwp1sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051567/mri/mwp2sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051567/mri/mwp3sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051567/mri/neuromorphometrics_sub-0051567_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SBL/sub-0051567/mri/neuromorphometrics_sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051567/mri/p0sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051567/mri/p1sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051567/mri/p2sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051567/mri/p3sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051567/mri/rp1sub-0051567_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051567/mri/rp2sub-0051567_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051567/mri/rp3sub-0051567_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MM/Vk/MD5E-s303798--7cdea672e856ad9375440625cbfc2646.nii.gz/MD5E-s303798--7cdea672e856ad9375440625cbfc2646.nii.gz

SBL/sub-0051567/mri/t_sub-0051567_T1w_affine_reorient.mat

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SBL/sub-0051567/mri/t_sub-0051567_T1w_rigid_reorient.mat

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SBL/sub-0051567/mri/thalamus_sub-0051567_T1w.csv

@@ -0,0 +1 @@
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SBL/sub-0051567/mri/thalamus_sub-0051567_T1w.nii.gz

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SBL/sub-0051567/mri/wj_sub-0051567_T1w.nii.gz

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SBL/sub-0051567/mri/wmisub-0051567_T1w.nii.gz

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SBL/sub-0051567/mri/wmsub-0051567_T1w.nii.gz

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SBL/sub-0051567/mri/wp0sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051567/mri/wp1sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051567/mri/wp2sub-0051567_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051567/mri/wp3sub-0051567_T1w.nii.gz

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