[DATALAD RUNCMD] Compute Leuven_2/sub-0050723

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_2/sub-0050723/anat/sub-0050723_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_2/sub-0050723"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_2/sub-0050723/label/catROI_sub-0050723_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/5W/xq/MD5E-s61339--14243167556868f83c610cf60da444ab.mat/MD5E-s61339--14243167556868f83c610cf60da444ab.mat

Leuven_2/sub-0050723/label/catROI_sub-0050723_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/f3/WJ/MD5E-s189059--5a3f36c528eae34f5fbdf4dd5ab97e0d.xml/MD5E-s189059--5a3f36c528eae34f5fbdf4dd5ab97e0d.xml

Leuven_2/sub-0050723/label/catROIs_sub-0050723_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vp/WJ/MD5E-s120113--fe926c34c28754dcd6ee4d50c6a0cc70.mat/MD5E-s120113--fe926c34c28754dcd6ee4d50c6a0cc70.mat

Leuven_2/sub-0050723/label/catROIs_sub-0050723_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/0W/v9/MD5E-s332120--6055a31fb7f9b43625a0b9715f770fd3.xml/MD5E-s332120--6055a31fb7f9b43625a0b9715f770fd3.xml

Leuven_2/sub-0050723/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050723_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_2/sub-0050723/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050723_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gF/vg/MD5E-s165543--6960bb7dd61873eaeab96121a2d2c151.nii.gz/MD5E-s165543--6960bb7dd61873eaeab96121a2d2c151.nii.gz

Leuven_2/sub-0050723/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050723_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_2/sub-0050723/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050723_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0X/V1/MD5E-s185082--6444137021a75747477aefee53cc839a.nii.gz/MD5E-s185082--6444137021a75747477aefee53cc839a.nii.gz

Leuven_2/sub-0050723/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050723_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_2/sub-0050723/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050723_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q7/17/MD5E-s236985--60b1632e5730659f2ad4b4a7360f429b.nii.gz/MD5E-s236985--60b1632e5730659f2ad4b4a7360f429b.nii.gz

Leuven_2/sub-0050723/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050723_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_2/sub-0050723/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050723_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6w/p6/MD5E-s263458--ce6cb6da838c1eff3ae587187f6412c3.nii.gz/MD5E-s263458--ce6cb6da838c1eff3ae587187f6412c3.nii.gz

Leuven_2/sub-0050723/mri/Tian_Subcortex_S2_7T_sub-0050723_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_2/sub-0050723/mri/Tian_Subcortex_S2_7T_sub-0050723_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3X/PW/MD5E-s25785--f6f9e9c98a76f5f58b79c9e9a0a0d81e.nii.gz/MD5E-s25785--f6f9e9c98a76f5f58b79c9e9a0a0d81e.nii.gz

Leuven_2/sub-0050723/mri/aal3_sub-0050723_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_2/sub-0050723/mri/aal3_sub-0050723_T1w.nii.gz

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Leuven_2/sub-0050723/mri/anatomy3_sub-0050723_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_2/sub-0050723/mri/anatomy3_sub-0050723_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vJ/x3/MD5E-s134419--129dcd42e0fe682ae17df19df4c5667b.nii.gz/MD5E-s134419--129dcd42e0fe682ae17df19df4c5667b.nii.gz

Leuven_2/sub-0050723/mri/anon_misub-0050723_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mz/7X/MD5E-s4987579--de1d2725458ea73f61ea98c1b8ad9e73.nii.gz/MD5E-s4987579--de1d2725458ea73f61ea98c1b8ad9e73.nii.gz

Leuven_2/sub-0050723/mri/anon_msub-0050723_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gM/kf/MD5E-s11686993--d28df2c2366adfa120018cd520886fc3.nii.gz/MD5E-s11686993--d28df2c2366adfa120018cd520886fc3.nii.gz

Leuven_2/sub-0050723/mri/cat_sub-0050723_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zx/gX/MD5E-s99011--1f34138bb9dc101fabe7c58a85009deb.nii.gz/MD5E-s99011--1f34138bb9dc101fabe7c58a85009deb.nii.gz

Leuven_2/sub-0050723/mri/cobra_sub-0050723_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_2/sub-0050723/mri/cobra_sub-0050723_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G9/Fj/MD5E-s48773--af8830b88c478a1444aadd320cbb488f.nii.gz/MD5E-s48773--af8830b88c478a1444aadd320cbb488f.nii.gz

Leuven_2/sub-0050723/mri/hammers_sub-0050723_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_2/sub-0050723/mri/hammers_sub-0050723_T1w.nii.gz

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Leuven_2/sub-0050723/mri/ibsr_sub-0050723_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_2/sub-0050723/mri/ibsr_sub-0050723_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050723/mri/it_sub-0050723_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xQ/KJ/MD5E-s283--1aaaf438d20db4721f35744ff14ab525.mat/MD5E-s283--1aaaf438d20db4721f35744ff14ab525.mat

Leuven_2/sub-0050723/mri/it_sub-0050723_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/38/8Z/MD5E-s284--1def2c595266152cefdeb0180dfb22f9.mat/MD5E-s284--1def2c595266152cefdeb0180dfb22f9.mat

Leuven_2/sub-0050723/mri/iy_sub-0050723_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/00/pv/MD5E-s37411749--fdcad047c2d3a3dbd7bab833c187f442.nii.gz/MD5E-s37411749--fdcad047c2d3a3dbd7bab833c187f442.nii.gz

Leuven_2/sub-0050723/mri/julichbrain_sub-0050723_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Leuven_2/sub-0050723/mri/julichbrain_sub-0050723_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050723/mri/lpba40_sub-0050723_T1w.csv

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Leuven_2/sub-0050723/mri/lpba40_sub-0050723_T1w.nii.gz

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Leuven_2/sub-0050723/mri/m0wp1sub-0050723_T1w.nii.gz

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Leuven_2/sub-0050723/mri/m0wp2sub-0050723_T1w.nii.gz

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Leuven_2/sub-0050723/mri/m0wp3sub-0050723_T1w.nii.gz

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Leuven_2/sub-0050723/mri/mori_sub-0050723_T1w.csv

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Leuven_2/sub-0050723/mri/mori_sub-0050723_T1w.nii.gz

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Leuven_2/sub-0050723/mri/mwp1sub-0050723_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vj/f9/MD5E-s2629952--580a1aa9240d8986cb05369efe76b2ee.nii.gz/MD5E-s2629952--580a1aa9240d8986cb05369efe76b2ee.nii.gz

Leuven_2/sub-0050723/mri/mwp2sub-0050723_T1w.nii.gz

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Leuven_2/sub-0050723/mri/mwp3sub-0050723_T1w.nii.gz

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Leuven_2/sub-0050723/mri/neuromorphometrics_sub-0050723_T1w.csv

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Leuven_2/sub-0050723/mri/neuromorphometrics_sub-0050723_T1w.nii.gz

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Leuven_2/sub-0050723/mri/p0sub-0050723_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050723/mri/p1sub-0050723_T1w.nii.gz

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Leuven_2/sub-0050723/mri/p2sub-0050723_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050723/mri/p3sub-0050723_T1w.nii.gz

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Leuven_2/sub-0050723/mri/rp1sub-0050723_T1w_affine.nii.gz

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Leuven_2/sub-0050723/mri/rp2sub-0050723_T1w_affine.nii.gz

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Leuven_2/sub-0050723/mri/rp3sub-0050723_T1w_affine.nii.gz

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Leuven_2/sub-0050723/mri/t_sub-0050723_T1w_affine_reorient.mat

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Leuven_2/sub-0050723/mri/t_sub-0050723_T1w_rigid_reorient.mat

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Leuven_2/sub-0050723/mri/thalamus_sub-0050723_T1w.csv

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Leuven_2/sub-0050723/mri/thalamus_sub-0050723_T1w.nii.gz

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Leuven_2/sub-0050723/mri/wj_sub-0050723_T1w.nii.gz

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Leuven_2/sub-0050723/mri/wmisub-0050723_T1w.nii.gz

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Leuven_2/sub-0050723/mri/wmsub-0050723_T1w.nii.gz

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Leuven_2/sub-0050723/mri/wp0sub-0050723_T1w.nii.gz

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Leuven_2/sub-0050723/mri/wp1sub-0050723_T1w.nii.gz

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