[DATALAD RUNCMD] Compute CMU_a/sub-0050656

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/CMU_a/sub-0050656/anat/sub-0050656_T1w.nii.gz"
 ],
 "outputs": [
  "CMU_a/sub-0050656"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

CMU_a/sub-0050656/label/catROI_sub-0050656_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/99/6f/MD5E-s57599--e3477929cb8a67154d2a51b29edec4eb.mat/MD5E-s57599--e3477929cb8a67154d2a51b29edec4eb.mat

CMU_a/sub-0050656/label/catROI_sub-0050656_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/0g/mK/MD5E-s188820--44b8746c0aaad9e74e4cd1bad9c4117f.xml/MD5E-s188820--44b8746c0aaad9e74e4cd1bad9c4117f.xml

CMU_a/sub-0050656/label/catROIs_sub-0050656_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/wf/8M/MD5E-s120184--02a2d5f6a9bbf14b15931528b45aa00c.mat/MD5E-s120184--02a2d5f6a9bbf14b15931528b45aa00c.mat

CMU_a/sub-0050656/label/catROIs_sub-0050656_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/qg/ZW/MD5E-s332106--cafed8ab15556af2f26ea54dae092182.xml/MD5E-s332106--cafed8ab15556af2f26ea54dae092182.xml

CMU_a/sub-0050656/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050656_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

CMU_a/sub-0050656/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050656_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q3/6X/MD5E-s155806--f88a17ac43eac5680456f11c64eebaa7.nii.gz/MD5E-s155806--f88a17ac43eac5680456f11c64eebaa7.nii.gz

CMU_a/sub-0050656/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050656_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

CMU_a/sub-0050656/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050656_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X7/8Q/MD5E-s174502--f8e903bee05924a45b764f14b102806d.nii.gz/MD5E-s174502--f8e903bee05924a45b764f14b102806d.nii.gz

CMU_a/sub-0050656/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050656_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

CMU_a/sub-0050656/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050656_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8M/XX/MD5E-s237491--1e1d1866d3cbebacdac959938c7e303a.nii.gz/MD5E-s237491--1e1d1866d3cbebacdac959938c7e303a.nii.gz

CMU_a/sub-0050656/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050656_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

CMU_a/sub-0050656/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050656_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g6/8J/MD5E-s263203--e01357d6bc875c73edcd3487f83a23a5.nii.gz/MD5E-s263203--e01357d6bc875c73edcd3487f83a23a5.nii.gz

CMU_a/sub-0050656/mri/Tian_Subcortex_S2_7T_sub-0050656_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

CMU_a/sub-0050656/mri/Tian_Subcortex_S2_7T_sub-0050656_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6Q/pp/MD5E-s24347--254d1c65d14ffb032f618dad0b3326df.nii.gz/MD5E-s24347--254d1c65d14ffb032f618dad0b3326df.nii.gz

CMU_a/sub-0050656/mri/aal3_sub-0050656_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

CMU_a/sub-0050656/mri/aal3_sub-0050656_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9z/v3/MD5E-s179592--e51d2b5975091cd9011bb0fb1551921a.nii.gz/MD5E-s179592--e51d2b5975091cd9011bb0fb1551921a.nii.gz

CMU_a/sub-0050656/mri/anatomy3_sub-0050656_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

CMU_a/sub-0050656/mri/anatomy3_sub-0050656_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/px/2w/MD5E-s129136--54f68517ae70fb020368c4b6b7677876.nii.gz/MD5E-s129136--54f68517ae70fb020368c4b6b7677876.nii.gz

CMU_a/sub-0050656/mri/anon_misub-0050656_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3v/JV/MD5E-s6914467--b7ea647e9457d9e45c885b0d87892d77.nii.gz/MD5E-s6914467--b7ea647e9457d9e45c885b0d87892d77.nii.gz

CMU_a/sub-0050656/mri/anon_msub-0050656_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xJ/0q/MD5E-s6753306--973d1b106381233765e7225be7100f97.nii.gz/MD5E-s6753306--973d1b106381233765e7225be7100f97.nii.gz

CMU_a/sub-0050656/mri/cat_sub-0050656_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4X/8X/MD5E-s92803--2b2b1e40cdd986e4822f4f352926584f.nii.gz/MD5E-s92803--2b2b1e40cdd986e4822f4f352926584f.nii.gz

CMU_a/sub-0050656/mri/cobra_sub-0050656_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

CMU_a/sub-0050656/mri/cobra_sub-0050656_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j6/17/MD5E-s46632--f9e0dcf0bb6d234eacf16dd6f95c0946.nii.gz/MD5E-s46632--f9e0dcf0bb6d234eacf16dd6f95c0946.nii.gz

CMU_a/sub-0050656/mri/hammers_sub-0050656_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

CMU_a/sub-0050656/mri/hammers_sub-0050656_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qz/xQ/MD5E-s137768--3ebbd56bfbaaadfb4e8304f6bc6725bd.nii.gz/MD5E-s137768--3ebbd56bfbaaadfb4e8304f6bc6725bd.nii.gz

CMU_a/sub-0050656/mri/ibsr_sub-0050656_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

CMU_a/sub-0050656/mri/ibsr_sub-0050656_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qw/85/MD5E-s147049--936dc997a39f1dea45326200af68b02e.nii.gz/MD5E-s147049--936dc997a39f1dea45326200af68b02e.nii.gz

CMU_a/sub-0050656/mri/it_sub-0050656_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/67/4g/MD5E-s283--f3719647b87692f0dd020c23da8b09d2.mat/MD5E-s283--f3719647b87692f0dd020c23da8b09d2.mat

CMU_a/sub-0050656/mri/it_sub-0050656_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/36/F3/MD5E-s283--e457db6731808091450ec8c7c38aa38d.mat/MD5E-s283--e457db6731808091450ec8c7c38aa38d.mat

CMU_a/sub-0050656/mri/iy_sub-0050656_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GW/pX/MD5E-s40553611--b70a2c53ff2d0ccb309427a1e799df99.nii.gz/MD5E-s40553611--b70a2c53ff2d0ccb309427a1e799df99.nii.gz

CMU_a/sub-0050656/mri/julichbrain_sub-0050656_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

CMU_a/sub-0050656/mri/julichbrain_sub-0050656_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f0/x5/MD5E-s186115--874051417d732b7e53ec586fd62dfdba.nii.gz/MD5E-s186115--874051417d732b7e53ec586fd62dfdba.nii.gz

CMU_a/sub-0050656/mri/lpba40_sub-0050656_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

CMU_a/sub-0050656/mri/lpba40_sub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/m0wp1sub-0050656_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vP/8M/MD5E-s2584083--96581803cac05fb5f7eefb79f9ca9cd8.nii.gz/MD5E-s2584083--96581803cac05fb5f7eefb79f9ca9cd8.nii.gz

CMU_a/sub-0050656/mri/m0wp2sub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/m0wp3sub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/mori_sub-0050656_T1w.csv

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CMU_a/sub-0050656/mri/mori_sub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/mwp1sub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/mwp2sub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/mwp3sub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/neuromorphometrics_sub-0050656_T1w.csv

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CMU_a/sub-0050656/mri/neuromorphometrics_sub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/p0sub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/p1sub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/p2sub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/p3sub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/rp1sub-0050656_T1w_affine.nii.gz

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CMU_a/sub-0050656/mri/rp2sub-0050656_T1w_affine.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050656/mri/rp3sub-0050656_T1w_affine.nii.gz

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CMU_a/sub-0050656/mri/t_sub-0050656_T1w_affine_reorient.mat

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+../../../.git/annex/objects/pz/Q0/MD5E-s283--f9f4523623f4c0a74da39b6e99d7fd0b.mat/MD5E-s283--f9f4523623f4c0a74da39b6e99d7fd0b.mat

CMU_a/sub-0050656/mri/t_sub-0050656_T1w_rigid_reorient.mat

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CMU_a/sub-0050656/mri/thalamus_sub-0050656_T1w.csv

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CMU_a/sub-0050656/mri/thalamus_sub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/wj_sub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/wmisub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/wmsub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/wp0sub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/wp1sub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/wp2sub-0050656_T1w.nii.gz

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CMU_a/sub-0050656/mri/wp3sub-0050656_T1w.nii.gz

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