[DATALAD RUNCMD] Compute UM_2/sub-0050402

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_2/sub-0050402/anat/sub-0050402_T1w.nii.gz"
 ],
 "outputs": [
  "UM_2/sub-0050402"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_2/sub-0050402/label/catROI_sub-0050402_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/3g/0F/MD5E-s57977--d84b7b34f819c12786081fe3000e5632.mat/MD5E-s57977--d84b7b34f819c12786081fe3000e5632.mat

UM_2/sub-0050402/label/catROI_sub-0050402_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gx/Jj/MD5E-s188829--4c1e1a0fbde97d6158bb3e1a87804df7.xml/MD5E-s188829--4c1e1a0fbde97d6158bb3e1a87804df7.xml

UM_2/sub-0050402/label/catROIs_sub-0050402_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/16/G6/MD5E-s120072--828c1a0b3a7b52068d836ea21c370028.mat/MD5E-s120072--828c1a0b3a7b52068d836ea21c370028.mat

UM_2/sub-0050402/label/catROIs_sub-0050402_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/7m/x1/MD5E-s332183--c5742f05f1c396f6c0e0df96c5b19c07.xml/MD5E-s332183--c5742f05f1c396f6c0e0df96c5b19c07.xml

UM_2/sub-0050402/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050402_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_2/sub-0050402/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050402_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VZ/JQ/MD5E-s129930--d2a920ece4b142fa2affa53438a452f1.nii.gz/MD5E-s129930--d2a920ece4b142fa2affa53438a452f1.nii.gz

UM_2/sub-0050402/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050402_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_2/sub-0050402/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050402_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M4/7w/MD5E-s144900--27556911989a3bec6633271bcd45fd73.nii.gz/MD5E-s144900--27556911989a3bec6633271bcd45fd73.nii.gz

UM_2/sub-0050402/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050402_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_2/sub-0050402/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050402_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fJ/6g/MD5E-s200938--54a2bbff2b4286bb18069189fa08a3a2.nii.gz/MD5E-s200938--54a2bbff2b4286bb18069189fa08a3a2.nii.gz

UM_2/sub-0050402/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050402_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_2/sub-0050402/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050402_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/20/vq/MD5E-s221721--4a94c506b980726d45c61b2f8b6ae7be.nii.gz/MD5E-s221721--4a94c506b980726d45c61b2f8b6ae7be.nii.gz

UM_2/sub-0050402/mri/Tian_Subcortex_S2_7T_sub-0050402_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_2/sub-0050402/mri/Tian_Subcortex_S2_7T_sub-0050402_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XX/jk/MD5E-s16185--4a6a57881169a8e1b64ec1e7eac2daa2.nii.gz/MD5E-s16185--4a6a57881169a8e1b64ec1e7eac2daa2.nii.gz

UM_2/sub-0050402/mri/aal3_sub-0050402_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

UM_2/sub-0050402/mri/aal3_sub-0050402_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050402/mri/anatomy3_sub-0050402_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UM_2/sub-0050402/mri/anatomy3_sub-0050402_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6J/11/MD5E-s102186--a53025f96feaa03e26808cdd75b97422.nii.gz/MD5E-s102186--a53025f96feaa03e26808cdd75b97422.nii.gz

UM_2/sub-0050402/mri/anon_misub-0050402_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wz/2Z/MD5E-s3964003--309a7f365466af9ee60da0a6abf31054.nii.gz/MD5E-s3964003--309a7f365466af9ee60da0a6abf31054.nii.gz

UM_2/sub-0050402/mri/anon_msub-0050402_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/v1/PJ/MD5E-s4971119--90cd22d7ed151da8e9275f2efe05a844.nii.gz/MD5E-s4971119--90cd22d7ed151da8e9275f2efe05a844.nii.gz

UM_2/sub-0050402/mri/cat_sub-0050402_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fp/4m/MD5E-s74641--a8a6f840d64adcf5fac8969e39f32848.nii.gz/MD5E-s74641--a8a6f840d64adcf5fac8969e39f32848.nii.gz

UM_2/sub-0050402/mri/cobra_sub-0050402_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_2/sub-0050402/mri/cobra_sub-0050402_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050402/mri/hammers_sub-0050402_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_2/sub-0050402/mri/hammers_sub-0050402_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6J/QZ/MD5E-s111207--6b5edf2a49ead44d6072c95dbbec08b8.nii.gz/MD5E-s111207--6b5edf2a49ead44d6072c95dbbec08b8.nii.gz

UM_2/sub-0050402/mri/ibsr_sub-0050402_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

UM_2/sub-0050402/mri/ibsr_sub-0050402_T1w.nii.gz

@@ -0,0 +1 @@
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UM_2/sub-0050402/mri/it_sub-0050402_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8g/MM/MD5E-s282--2afd7448663ff6a0f5ab98eb9a220ac5.mat/MD5E-s282--2afd7448663ff6a0f5ab98eb9a220ac5.mat

UM_2/sub-0050402/mri/it_sub-0050402_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/7P/Mz/MD5E-s282--640b653b56dd098827f24875ad628b00.mat/MD5E-s282--640b653b56dd098827f24875ad628b00.mat

UM_2/sub-0050402/mri/iy_sub-0050402_T1w.nii.gz

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+../../../.git/annex/objects/P5/pM/MD5E-s30435854--a647ca6274eb4ee3a3f6bde3138af78c.nii.gz/MD5E-s30435854--a647ca6274eb4ee3a3f6bde3138af78c.nii.gz

UM_2/sub-0050402/mri/julichbrain_sub-0050402_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_2/sub-0050402/mri/julichbrain_sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/lpba40_sub-0050402_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UM_2/sub-0050402/mri/lpba40_sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/m0wp1sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/m0wp2sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/m0wp3sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/mori_sub-0050402_T1w.csv

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UM_2/sub-0050402/mri/mori_sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/mwp1sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/mwp2sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/mwp3sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/neuromorphometrics_sub-0050402_T1w.csv

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UM_2/sub-0050402/mri/neuromorphometrics_sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/p0sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/p1sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/p2sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/p3sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/rp1sub-0050402_T1w_affine.nii.gz

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UM_2/sub-0050402/mri/rp2sub-0050402_T1w_affine.nii.gz

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UM_2/sub-0050402/mri/rp3sub-0050402_T1w_affine.nii.gz

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UM_2/sub-0050402/mri/t_sub-0050402_T1w_affine_reorient.mat

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UM_2/sub-0050402/mri/t_sub-0050402_T1w_rigid_reorient.mat

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UM_2/sub-0050402/mri/thalamus_sub-0050402_T1w.csv

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UM_2/sub-0050402/mri/thalamus_sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/wj_sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/wmisub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/wmsub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/wp0sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/wp1sub-0050402_T1w.nii.gz

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UM_2/sub-0050402/mri/wp2sub-0050402_T1w.nii.gz

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