[DATALAD RUNCMD] Compute Trinity/sub-0050234

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Trinity/sub-0050234/anat/sub-0050234_T1w.nii.gz"
 ],
 "outputs": [
  "Trinity/sub-0050234"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Trinity/sub-0050234/label/catROI_sub-0050234_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/4g/xq/MD5E-s61410--0a4f0ddd116d8125b5569cb2a5668e0e.mat/MD5E-s61410--0a4f0ddd116d8125b5569cb2a5668e0e.mat

Trinity/sub-0050234/label/catROI_sub-0050234_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/mg/mK/MD5E-s188536--cbfa1a7bdc56312d523555106b8dd3fb.xml/MD5E-s188536--cbfa1a7bdc56312d523555106b8dd3fb.xml

Trinity/sub-0050234/label/catROIs_sub-0050234_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/v7/4x/MD5E-s119958--67696d316bb058acac2e24dd672acc6d.mat/MD5E-s119958--67696d316bb058acac2e24dd672acc6d.mat

Trinity/sub-0050234/label/catROIs_sub-0050234_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/xf/Pk/MD5E-s332185--2383777efa3ccf3000e0f4bd5cec9684.xml/MD5E-s332185--2383777efa3ccf3000e0f4bd5cec9684.xml

Trinity/sub-0050234/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050234_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Trinity/sub-0050234/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050234_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qq/G3/MD5E-s188085--93602a8dcb235ea3acab2a62871acd78.nii.gz/MD5E-s188085--93602a8dcb235ea3acab2a62871acd78.nii.gz

Trinity/sub-0050234/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050234_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Trinity/sub-0050234/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050234_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gw/1m/MD5E-s213195--caa7e32a2a2e4911b41399f06e7b2a99.nii.gz/MD5E-s213195--caa7e32a2a2e4911b41399f06e7b2a99.nii.gz

Trinity/sub-0050234/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050234_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Trinity/sub-0050234/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050234_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7g/3z/MD5E-s285889--dc3ce2e63a3430a788df70d5918967f4.nii.gz/MD5E-s285889--dc3ce2e63a3430a788df70d5918967f4.nii.gz

Trinity/sub-0050234/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050234_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Trinity/sub-0050234/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050234_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x6/2x/MD5E-s319051--a970435059127d362299a73a520b3314.nii.gz/MD5E-s319051--a970435059127d362299a73a520b3314.nii.gz

Trinity/sub-0050234/mri/Tian_Subcortex_S2_7T_sub-0050234_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Trinity/sub-0050234/mri/Tian_Subcortex_S2_7T_sub-0050234_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vm/Zf/MD5E-s25125--adbe08274ef7c390e04d7989b58e8092.nii.gz/MD5E-s25125--adbe08274ef7c390e04d7989b58e8092.nii.gz

Trinity/sub-0050234/mri/aal3_sub-0050234_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050234/mri/aal3_sub-0050234_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050234/mri/anatomy3_sub-0050234_T1w.csv

@@ -0,0 +1 @@
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Trinity/sub-0050234/mri/anatomy3_sub-0050234_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FQ/f3/MD5E-s152019--6e5c0030dbb9f054fc42baafae1875c3.nii.gz/MD5E-s152019--6e5c0030dbb9f054fc42baafae1875c3.nii.gz

Trinity/sub-0050234/mri/anon_misub-0050234_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050234/mri/anon_msub-0050234_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X0/71/MD5E-s9421547--c717ba558a9054e2f3a49066f203444f.nii.gz/MD5E-s9421547--c717ba558a9054e2f3a49066f203444f.nii.gz

Trinity/sub-0050234/mri/cat_sub-0050234_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/9v/MD5E-s112670--44a15209af08710124515649f01d9124.nii.gz/MD5E-s112670--44a15209af08710124515649f01d9124.nii.gz

Trinity/sub-0050234/mri/cobra_sub-0050234_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Trinity/sub-0050234/mri/cobra_sub-0050234_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/56/fj/MD5E-s51650--37de23f7cbe4892df48c741b09670cc5.nii.gz/MD5E-s51650--37de23f7cbe4892df48c741b09670cc5.nii.gz

Trinity/sub-0050234/mri/hammers_sub-0050234_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Trinity/sub-0050234/mri/hammers_sub-0050234_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FG/wv/MD5E-s166926--a6fd8532f678dc14ef3a1ab8d7217285.nii.gz/MD5E-s166926--a6fd8532f678dc14ef3a1ab8d7217285.nii.gz

Trinity/sub-0050234/mri/ibsr_sub-0050234_T1w.csv

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Trinity/sub-0050234/mri/ibsr_sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/it_sub-0050234_T1w_affine_reorient.mat

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Trinity/sub-0050234/mri/it_sub-0050234_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fz/65/MD5E-s282--b6af025de1ca533a2fd1071fbde087a4.mat/MD5E-s282--b6af025de1ca533a2fd1071fbde087a4.mat

Trinity/sub-0050234/mri/iy_sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/julichbrain_sub-0050234_T1w.csv

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Trinity/sub-0050234/mri/julichbrain_sub-0050234_T1w.nii.gz

@@ -0,0 +1 @@
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Trinity/sub-0050234/mri/lpba40_sub-0050234_T1w.csv

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Trinity/sub-0050234/mri/lpba40_sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/m0wp1sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/m0wp2sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/m0wp3sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/mori_sub-0050234_T1w.csv

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Trinity/sub-0050234/mri/mori_sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/mwp1sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/mwp2sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/mwp3sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/neuromorphometrics_sub-0050234_T1w.csv

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Trinity/sub-0050234/mri/neuromorphometrics_sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/p0sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/p1sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/p2sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/p3sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/rp1sub-0050234_T1w_affine.nii.gz

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Trinity/sub-0050234/mri/rp2sub-0050234_T1w_affine.nii.gz

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Trinity/sub-0050234/mri/rp3sub-0050234_T1w_affine.nii.gz

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Trinity/sub-0050234/mri/t_sub-0050234_T1w_affine_reorient.mat

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Trinity/sub-0050234/mri/t_sub-0050234_T1w_rigid_reorient.mat

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Trinity/sub-0050234/mri/thalamus_sub-0050234_T1w.csv

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Trinity/sub-0050234/mri/thalamus_sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/wj_sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/wmisub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/wmsub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/wp0sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/wp1sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/wp2sub-0050234_T1w.nii.gz

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Trinity/sub-0050234/mri/wp3sub-0050234_T1w.nii.gz

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