[DATALAD RUNCMD] Compute Yale/sub-0050607

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Yale/sub-0050607/anat/sub-0050607_T1w.nii.gz"
 ],
 "outputs": [
  "Yale/sub-0050607"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Yale/sub-0050607/label/catROI_sub-0050607_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/q7/Jq/MD5E-s58134--78d62b45d87f12736c27b459e42a4429.mat/MD5E-s58134--78d62b45d87f12736c27b459e42a4429.mat

Yale/sub-0050607/label/catROI_sub-0050607_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zq/J0/MD5E-s188646--e467eeb5fcdf75051a7a7cd41d7cb702.xml/MD5E-s188646--e467eeb5fcdf75051a7a7cd41d7cb702.xml

Yale/sub-0050607/label/catROIs_sub-0050607_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/3Q/V8/MD5E-s120099--7c4743a3eac586381a9ce184bc9b8775.mat/MD5E-s120099--7c4743a3eac586381a9ce184bc9b8775.mat

Yale/sub-0050607/label/catROIs_sub-0050607_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zj/qj/MD5E-s332152--d0381df8ed9dc8f8e06d21a0ecd69a0c.xml/MD5E-s332152--d0381df8ed9dc8f8e06d21a0ecd69a0c.xml

Yale/sub-0050607/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Yale/sub-0050607/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zq/W0/MD5E-s185724--1922fceabfa5847c3ed6cffdb67ee2fb.nii.gz/MD5E-s185724--1922fceabfa5847c3ed6cffdb67ee2fb.nii.gz

Yale/sub-0050607/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Yale/sub-0050607/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/G1/MD5E-s209490--ad4da5cf118ae3e9d360cd7362b67266.nii.gz/MD5E-s209490--ad4da5cf118ae3e9d360cd7362b67266.nii.gz

Yale/sub-0050607/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Yale/sub-0050607/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fW/Fm/MD5E-s281975--1a08bb67b0e06f405dfb43e6454a3161.nii.gz/MD5E-s281975--1a08bb67b0e06f405dfb43e6454a3161.nii.gz

Yale/sub-0050607/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Yale/sub-0050607/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KV/70/MD5E-s313492--1af57d6aa9d33aedb3a84b303ba34e46.nii.gz/MD5E-s313492--1af57d6aa9d33aedb3a84b303ba34e46.nii.gz

Yale/sub-0050607/mri/Tian_Subcortex_S2_7T_sub-0050607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Yale/sub-0050607/mri/Tian_Subcortex_S2_7T_sub-0050607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fK/Gw/MD5E-s24960--60a68823371c5db4dcc410b5fbb780f5.nii.gz/MD5E-s24960--60a68823371c5db4dcc410b5fbb780f5.nii.gz

Yale/sub-0050607/mri/aal3_sub-0050607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Yale/sub-0050607/mri/aal3_sub-0050607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P7/QK/MD5E-s210266--9c1665053b2d102ff9bfdce8019928da.nii.gz/MD5E-s210266--9c1665053b2d102ff9bfdce8019928da.nii.gz

Yale/sub-0050607/mri/anatomy3_sub-0050607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Yale/sub-0050607/mri/anatomy3_sub-0050607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mj/3F/MD5E-s148896--7a74f23c0b9ee51de3f3277ccef8210d.nii.gz/MD5E-s148896--7a74f23c0b9ee51de3f3277ccef8210d.nii.gz

Yale/sub-0050607/mri/anon_misub-0050607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6k/qv/MD5E-s5581473--88e7698ddc557d2e78e3d7878a40d94a.nii.gz/MD5E-s5581473--88e7698ddc557d2e78e3d7878a40d94a.nii.gz

Yale/sub-0050607/mri/anon_msub-0050607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z2/33/MD5E-s10352890--60597862fca9da62c2a486e53154012f.nii.gz/MD5E-s10352890--60597862fca9da62c2a486e53154012f.nii.gz

Yale/sub-0050607/mri/cat_sub-0050607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vz/54/MD5E-s108660--fefb58b4e8c4f351bad2506625bda406.nii.gz/MD5E-s108660--fefb58b4e8c4f351bad2506625bda406.nii.gz

Yale/sub-0050607/mri/cobra_sub-0050607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Yale/sub-0050607/mri/cobra_sub-0050607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6p/11/MD5E-s50032--da97a14a30efb5f0428eca692e2f4f46.nii.gz/MD5E-s50032--da97a14a30efb5f0428eca692e2f4f46.nii.gz

Yale/sub-0050607/mri/hammers_sub-0050607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Yale/sub-0050607/mri/hammers_sub-0050607_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/ff/MD5E-s163552--21a7d1bcf28032660ffe2c5cf5eb9122.nii.gz/MD5E-s163552--21a7d1bcf28032660ffe2c5cf5eb9122.nii.gz

Yale/sub-0050607/mri/ibsr_sub-0050607_T1w.csv

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+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Yale/sub-0050607/mri/ibsr_sub-0050607_T1w.nii.gz

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+../../../.git/annex/objects/FQ/FX/MD5E-s173251--b1d54e108b3b830338fdd4f7edc17636.nii.gz/MD5E-s173251--b1d54e108b3b830338fdd4f7edc17636.nii.gz

Yale/sub-0050607/mri/it_sub-0050607_T1w_affine_reorient.mat

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+../../../.git/annex/objects/57/zz/MD5E-s283--000ce857cd75a06211ab8cf268f786df.mat/MD5E-s283--000ce857cd75a06211ab8cf268f786df.mat

Yale/sub-0050607/mri/it_sub-0050607_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/w2/pj/MD5E-s283--fd57a76fb4abbfc597f9dd660d8d6abb.mat/MD5E-s283--fd57a76fb4abbfc597f9dd660d8d6abb.mat

Yale/sub-0050607/mri/iy_sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/julichbrain_sub-0050607_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Yale/sub-0050607/mri/julichbrain_sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/lpba40_sub-0050607_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Yale/sub-0050607/mri/lpba40_sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/m0wp1sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/m0wp2sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/m0wp3sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/mori_sub-0050607_T1w.csv

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Yale/sub-0050607/mri/mori_sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/mwp1sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/mwp2sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/mwp3sub-0050607_T1w.nii.gz

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+../../../.git/annex/objects/FZ/5W/MD5E-s2691859--eeba632820838c9f20130ca1dd23fa8f.nii.gz/MD5E-s2691859--eeba632820838c9f20130ca1dd23fa8f.nii.gz

Yale/sub-0050607/mri/neuromorphometrics_sub-0050607_T1w.csv

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Yale/sub-0050607/mri/neuromorphometrics_sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/p0sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/p1sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/p2sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/p3sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/rp1sub-0050607_T1w_affine.nii.gz

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Yale/sub-0050607/mri/rp2sub-0050607_T1w_affine.nii.gz

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Yale/sub-0050607/mri/rp3sub-0050607_T1w_affine.nii.gz

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Yale/sub-0050607/mri/t_sub-0050607_T1w_affine_reorient.mat

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Yale/sub-0050607/mri/t_sub-0050607_T1w_rigid_reorient.mat

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Yale/sub-0050607/mri/thalamus_sub-0050607_T1w.csv

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Yale/sub-0050607/mri/thalamus_sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/wj_sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/wmisub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/wmsub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/wp0sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/wp1sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/wp2sub-0050607_T1w.nii.gz

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Yale/sub-0050607/mri/wp3sub-0050607_T1w.nii.gz

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