[DATALAD RUNCMD] Compute Yale/sub-0050609

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Yale/sub-0050609/anat/sub-0050609_T1w.nii.gz"
 ],
 "outputs": [
  "Yale/sub-0050609"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Yale/sub-0050609/label/catROI_sub-0050609_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/q2/4K/MD5E-s57903--1c518c3611ff1b75c0e036a63766de07.mat/MD5E-s57903--1c518c3611ff1b75c0e036a63766de07.mat

Yale/sub-0050609/label/catROI_sub-0050609_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/K8/Qx/MD5E-s188984--be7992b2540a61d74e1778fe73ac7bb3.xml/MD5E-s188984--be7992b2540a61d74e1778fe73ac7bb3.xml

Yale/sub-0050609/label/catROIs_sub-0050609_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/mk/xf/MD5E-s120199--85471235c46d770b9856831d9d2f09b1.mat/MD5E-s120199--85471235c46d770b9856831d9d2f09b1.mat

Yale/sub-0050609/label/catROIs_sub-0050609_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/mw/jp/MD5E-s332099--90e91aeb03b106137f27b97f56d8acb7.xml/MD5E-s332099--90e91aeb03b106137f27b97f56d8acb7.xml

Yale/sub-0050609/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050609_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Yale/sub-0050609/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050609_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xj/Q8/MD5E-s167271--c9d65c446d79ebd9bfd97aabaf7cce90.nii.gz/MD5E-s167271--c9d65c446d79ebd9bfd97aabaf7cce90.nii.gz

Yale/sub-0050609/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050609_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Yale/sub-0050609/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050609_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/14/kQ/MD5E-s186292--ab5c079517e5d5c29242a0d0a413b86a.nii.gz/MD5E-s186292--ab5c079517e5d5c29242a0d0a413b86a.nii.gz

Yale/sub-0050609/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050609_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Yale/sub-0050609/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050609_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wK/q1/MD5E-s252220--b911e496a935d918c2bd895c81f108dd.nii.gz/MD5E-s252220--b911e496a935d918c2bd895c81f108dd.nii.gz

Yale/sub-0050609/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050609_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Yale/sub-0050609/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050609_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xx/4p/MD5E-s279677--9ee22ee837b55754ece1dc0bf0ef0d08.nii.gz/MD5E-s279677--9ee22ee837b55754ece1dc0bf0ef0d08.nii.gz

Yale/sub-0050609/mri/Tian_Subcortex_S2_7T_sub-0050609_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Yale/sub-0050609/mri/Tian_Subcortex_S2_7T_sub-0050609_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xW/gm/MD5E-s23248--08e4e8defa963afa7bd34b2c09508ee9.nii.gz/MD5E-s23248--08e4e8defa963afa7bd34b2c09508ee9.nii.gz

Yale/sub-0050609/mri/aal3_sub-0050609_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Yale/sub-0050609/mri/aal3_sub-0050609_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4q/J0/MD5E-s187263--eb678e542f09d4ef515e4abf6d845fca.nii.gz/MD5E-s187263--eb678e542f09d4ef515e4abf6d845fca.nii.gz

Yale/sub-0050609/mri/anatomy3_sub-0050609_T1w.csv

@@ -0,0 +1 @@
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Yale/sub-0050609/mri/anatomy3_sub-0050609_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xv/gV/MD5E-s134989--16cca3406a59195a53f3ee5fd3d7d609.nii.gz/MD5E-s134989--16cca3406a59195a53f3ee5fd3d7d609.nii.gz

Yale/sub-0050609/mri/anon_misub-0050609_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XG/5M/MD5E-s7685605--bd9dd8c6a7ed634792613aee14d17477.nii.gz/MD5E-s7685605--bd9dd8c6a7ed634792613aee14d17477.nii.gz

Yale/sub-0050609/mri/anon_msub-0050609_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/37/Kq/MD5E-s7462196--7cd30539a67af64c31f6258c81eeace8.nii.gz/MD5E-s7462196--7cd30539a67af64c31f6258c81eeace8.nii.gz

Yale/sub-0050609/mri/cat_sub-0050609_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q7/fk/MD5E-s94817--80638e43fa5f181f21d50dd294eb6c2e.nii.gz/MD5E-s94817--80638e43fa5f181f21d50dd294eb6c2e.nii.gz

Yale/sub-0050609/mri/cobra_sub-0050609_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Yale/sub-0050609/mri/cobra_sub-0050609_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Px/V0/MD5E-s48039--dc5745fe39af3b88d59239c329dd823c.nii.gz/MD5E-s48039--dc5745fe39af3b88d59239c329dd823c.nii.gz

Yale/sub-0050609/mri/hammers_sub-0050609_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Yale/sub-0050609/mri/hammers_sub-0050609_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kz/QF/MD5E-s146589--a5578ef46416d60f64adf0735a978392.nii.gz/MD5E-s146589--a5578ef46416d60f64adf0735a978392.nii.gz

Yale/sub-0050609/mri/ibsr_sub-0050609_T1w.csv

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+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Yale/sub-0050609/mri/ibsr_sub-0050609_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KP/j7/MD5E-s156401--f246a40b8e2038d30cf99db4e68aeb7a.nii.gz/MD5E-s156401--f246a40b8e2038d30cf99db4e68aeb7a.nii.gz

Yale/sub-0050609/mri/it_sub-0050609_T1w_affine_reorient.mat

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+../../../.git/annex/objects/Wj/M0/MD5E-s283--fe1d74bf3ae6055ec1e00538278e3c09.mat/MD5E-s283--fe1d74bf3ae6055ec1e00538278e3c09.mat

Yale/sub-0050609/mri/it_sub-0050609_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/kq/PQ/MD5E-s280--5161cd194d448a66e012f7fa6190c02e.mat/MD5E-s280--5161cd194d448a66e012f7fa6190c02e.mat

Yale/sub-0050609/mri/iy_sub-0050609_T1w.nii.gz

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+../../../.git/annex/objects/Jz/7M/MD5E-s45310960--56d5f2b0274ab60f592332655dbddd27.nii.gz/MD5E-s45310960--56d5f2b0274ab60f592332655dbddd27.nii.gz

Yale/sub-0050609/mri/julichbrain_sub-0050609_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Yale/sub-0050609/mri/julichbrain_sub-0050609_T1w.nii.gz

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+../../../.git/annex/objects/p4/V1/MD5E-s200995--3b06d15d11d5dee00d3e638184be7bcf.nii.gz/MD5E-s200995--3b06d15d11d5dee00d3e638184be7bcf.nii.gz

Yale/sub-0050609/mri/lpba40_sub-0050609_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Yale/sub-0050609/mri/lpba40_sub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/m0wp1sub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/m0wp2sub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/m0wp3sub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/mori_sub-0050609_T1w.csv

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Yale/sub-0050609/mri/mori_sub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/mwp1sub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/mwp2sub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/mwp3sub-0050609_T1w.nii.gz

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+../../../.git/annex/objects/5X/Xj/MD5E-s2415303--14368023dc4eb2d495ce3a312c374d82.nii.gz/MD5E-s2415303--14368023dc4eb2d495ce3a312c374d82.nii.gz

Yale/sub-0050609/mri/neuromorphometrics_sub-0050609_T1w.csv

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Yale/sub-0050609/mri/neuromorphometrics_sub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/p0sub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/p1sub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/p2sub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/p3sub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/rp1sub-0050609_T1w_affine.nii.gz

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Yale/sub-0050609/mri/rp2sub-0050609_T1w_affine.nii.gz

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Yale/sub-0050609/mri/rp3sub-0050609_T1w_affine.nii.gz

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Yale/sub-0050609/mri/t_sub-0050609_T1w_affine_reorient.mat

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Yale/sub-0050609/mri/t_sub-0050609_T1w_rigid_reorient.mat

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Yale/sub-0050609/mri/thalamus_sub-0050609_T1w.csv

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Yale/sub-0050609/mri/thalamus_sub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/wj_sub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/wmisub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/wmsub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/wp0sub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/wp1sub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/wp2sub-0050609_T1w.nii.gz

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Yale/sub-0050609/mri/wp3sub-0050609_T1w.nii.gz

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