[DATALAD RUNCMD] Compute Pitt/sub-0050009

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Pitt/sub-0050009/anat/sub-0050009_T1w.nii.gz"
 ],
 "outputs": [
  "Pitt/sub-0050009"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Pitt/sub-0050009/label/catROI_sub-0050009_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/Z7/MD5E-s61348--b83f4a0ccae86df1a5b3ece43f11713d.mat/MD5E-s61348--b83f4a0ccae86df1a5b3ece43f11713d.mat

Pitt/sub-0050009/label/catROI_sub-0050009_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/jJ/76/MD5E-s188716--0939cd9a3ae6a669d8674659f25b0e49.xml/MD5E-s188716--0939cd9a3ae6a669d8674659f25b0e49.xml

Pitt/sub-0050009/label/catROIs_sub-0050009_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gW/Fp/MD5E-s120099--f84d746f3966f97a6db362e138a041de.mat/MD5E-s120099--f84d746f3966f97a6db362e138a041de.mat

Pitt/sub-0050009/label/catROIs_sub-0050009_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zp/6V/MD5E-s332173--f0cfd51d862612453008afbb30c58c28.xml/MD5E-s332173--f0cfd51d862612453008afbb30c58c28.xml

Pitt/sub-0050009/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050009_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Pitt/sub-0050009/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050009_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PQ/33/MD5E-s167292--1e4eab6afd62cfba80668c270dbcf0ff.nii.gz/MD5E-s167292--1e4eab6afd62cfba80668c270dbcf0ff.nii.gz

Pitt/sub-0050009/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050009_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Pitt/sub-0050009/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050009_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qg/Q8/MD5E-s185363--405f09c09c90a157e1f127175f64a4ac.nii.gz/MD5E-s185363--405f09c09c90a157e1f127175f64a4ac.nii.gz

Pitt/sub-0050009/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050009_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Pitt/sub-0050009/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050009_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J0/0q/MD5E-s251122--d27c81b0d24a3bc84380e2f1c8b82731.nii.gz/MD5E-s251122--d27c81b0d24a3bc84380e2f1c8b82731.nii.gz

Pitt/sub-0050009/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050009_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Pitt/sub-0050009/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050009_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/74/48/MD5E-s278124--a01622b09ff3a5b1d264479162b3be44.nii.gz/MD5E-s278124--a01622b09ff3a5b1d264479162b3be44.nii.gz

Pitt/sub-0050009/mri/Tian_Subcortex_S2_7T_sub-0050009_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Pitt/sub-0050009/mri/Tian_Subcortex_S2_7T_sub-0050009_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M3/0q/MD5E-s25544--03b76a88032eec2e45771a581c528405.nii.gz/MD5E-s25544--03b76a88032eec2e45771a581c528405.nii.gz

Pitt/sub-0050009/mri/aal3_sub-0050009_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Pitt/sub-0050009/mri/aal3_sub-0050009_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/FM/MD5E-s190726--5fead085735597633540e28808b12f4a.nii.gz/MD5E-s190726--5fead085735597633540e28808b12f4a.nii.gz

Pitt/sub-0050009/mri/anatomy3_sub-0050009_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Pitt/sub-0050009/mri/anatomy3_sub-0050009_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QP/GM/MD5E-s138165--e35b69d0a81baa3542f379e73848f115.nii.gz/MD5E-s138165--e35b69d0a81baa3542f379e73848f115.nii.gz

Pitt/sub-0050009/mri/anon_misub-0050009_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q0/P9/MD5E-s5481633--4474e6e1980806ef2e7252701b9b5b0d.nii.gz/MD5E-s5481633--4474e6e1980806ef2e7252701b9b5b0d.nii.gz

Pitt/sub-0050009/mri/anon_msub-0050009_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2q/2K/MD5E-s13610445--d5a0f6ac30f53143f5f707e47c190ef0.nii.gz/MD5E-s13610445--d5a0f6ac30f53143f5f707e47c190ef0.nii.gz

Pitt/sub-0050009/mri/cat_sub-0050009_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1P/q3/MD5E-s106863--042380c900a791d0db0d39352ca08984.nii.gz/MD5E-s106863--042380c900a791d0db0d39352ca08984.nii.gz

Pitt/sub-0050009/mri/cobra_sub-0050009_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Pitt/sub-0050009/mri/cobra_sub-0050009_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JW/zm/MD5E-s50322--52cbe3904b44427e65ef0cfed6c639a7.nii.gz/MD5E-s50322--52cbe3904b44427e65ef0cfed6c639a7.nii.gz

Pitt/sub-0050009/mri/hammers_sub-0050009_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Pitt/sub-0050009/mri/hammers_sub-0050009_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5F/15/MD5E-s152404--f9f93a78c79493fa9ad137e718c92593.nii.gz/MD5E-s152404--f9f93a78c79493fa9ad137e718c92593.nii.gz

Pitt/sub-0050009/mri/ibsr_sub-0050009_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Pitt/sub-0050009/mri/ibsr_sub-0050009_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q2/qZ/MD5E-s160101--75bd9c43618d29ac8dd8a1c3a9ae696a.nii.gz/MD5E-s160101--75bd9c43618d29ac8dd8a1c3a9ae696a.nii.gz

Pitt/sub-0050009/mri/it_sub-0050009_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/64/jm/MD5E-s283--fe9052654ebd474b26b81d46853ac25d.mat/MD5E-s283--fe9052654ebd474b26b81d46853ac25d.mat

Pitt/sub-0050009/mri/it_sub-0050009_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/P9/pF/MD5E-s284--ba1ccbe075f663eef945dcad9d902d71.mat/MD5E-s284--ba1ccbe075f663eef945dcad9d902d71.mat

Pitt/sub-0050009/mri/iy_sub-0050009_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/km/1w/MD5E-s46654054--6695066a271dc45eadb8372d26fbe764.nii.gz/MD5E-s46654054--6695066a271dc45eadb8372d26fbe764.nii.gz

Pitt/sub-0050009/mri/julichbrain_sub-0050009_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Pitt/sub-0050009/mri/julichbrain_sub-0050009_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/53/vk/MD5E-s200699--85de2c6507dd2853dd77bf909f7e3090.nii.gz/MD5E-s200699--85de2c6507dd2853dd77bf909f7e3090.nii.gz

Pitt/sub-0050009/mri/lpba40_sub-0050009_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Pitt/sub-0050009/mri/lpba40_sub-0050009_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pk/QF/MD5E-s145350--4257a6b27a93c90ba040978f410d026e.nii.gz/MD5E-s145350--4257a6b27a93c90ba040978f410d026e.nii.gz

Pitt/sub-0050009/mri/m0wp1sub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/m0wp2sub-0050009_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050009/mri/m0wp3sub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/mori_sub-0050009_T1w.csv

@@ -0,0 +1 @@
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Pitt/sub-0050009/mri/mori_sub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/mwp1sub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/mwp2sub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/mwp3sub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/neuromorphometrics_sub-0050009_T1w.csv

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Pitt/sub-0050009/mri/neuromorphometrics_sub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/p0sub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/p1sub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/p2sub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/p3sub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/rp1sub-0050009_T1w_affine.nii.gz

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Pitt/sub-0050009/mri/rp2sub-0050009_T1w_affine.nii.gz

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Pitt/sub-0050009/mri/rp3sub-0050009_T1w_affine.nii.gz

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Pitt/sub-0050009/mri/t_sub-0050009_T1w_affine_reorient.mat

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Pitt/sub-0050009/mri/t_sub-0050009_T1w_rigid_reorient.mat

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Pitt/sub-0050009/mri/thalamus_sub-0050009_T1w.csv

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Pitt/sub-0050009/mri/thalamus_sub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/wj_sub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/wmisub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/wmsub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/wp0sub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/wp1sub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/wp2sub-0050009_T1w.nii.gz

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Pitt/sub-0050009/mri/wp3sub-0050009_T1w.nii.gz

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