[DATALAD RUNCMD] Compute OHSU/sub-0050153

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/OHSU/sub-0050153/anat/sub-0050153_T1w.nii.gz"
 ],
 "outputs": [
  "OHSU/sub-0050153"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

OHSU/sub-0050153/label/catROI_sub-0050153_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/2V/G6/MD5E-s61297--1d3de627fd9bfbcd8a7471595819ab55.mat/MD5E-s61297--1d3de627fd9bfbcd8a7471595819ab55.mat

OHSU/sub-0050153/label/catROI_sub-0050153_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qx/pZ/MD5E-s188981--b59ab6368af08200c0aee8898e3451b9.xml/MD5E-s188981--b59ab6368af08200c0aee8898e3451b9.xml

OHSU/sub-0050153/label/catROIs_sub-0050153_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/0P/pM/MD5E-s120179--84bcf2aae3649041c00fa18b159fe394.mat/MD5E-s120179--84bcf2aae3649041c00fa18b159fe394.mat

OHSU/sub-0050153/label/catROIs_sub-0050153_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/79/80/MD5E-s332109--f3bc6daad4143af8e82a35dbe9854c24.xml/MD5E-s332109--f3bc6daad4143af8e82a35dbe9854c24.xml

OHSU/sub-0050153/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

OHSU/sub-0050153/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q0/xX/MD5E-s150609--8308bd46ab716675f465fbfb9109a4c7.nii.gz/MD5E-s150609--8308bd46ab716675f465fbfb9109a4c7.nii.gz

OHSU/sub-0050153/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

OHSU/sub-0050153/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j3/WG/MD5E-s171225--c382306a4d577da3822a73378036dda9.nii.gz/MD5E-s171225--c382306a4d577da3822a73378036dda9.nii.gz

OHSU/sub-0050153/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

OHSU/sub-0050153/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zj/34/MD5E-s230583--ab04cd33e9dd070523ad2dfe7d69b267.nii.gz/MD5E-s230583--ab04cd33e9dd070523ad2dfe7d69b267.nii.gz

OHSU/sub-0050153/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

OHSU/sub-0050153/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x0/f5/MD5E-s256351--c0a712fa5129855dc907b3169d585deb.nii.gz/MD5E-s256351--c0a712fa5129855dc907b3169d585deb.nii.gz

OHSU/sub-0050153/mri/Tian_Subcortex_S2_7T_sub-0050153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

OHSU/sub-0050153/mri/Tian_Subcortex_S2_7T_sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MF/KG/MD5E-s20711--8c7a85aca6264a8a44a69884c4646787.nii.gz/MD5E-s20711--8c7a85aca6264a8a44a69884c4646787.nii.gz

OHSU/sub-0050153/mri/aal3_sub-0050153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

OHSU/sub-0050153/mri/aal3_sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j0/X8/MD5E-s173854--b0ee971ac9b86c49c09ab805aeb48d01.nii.gz/MD5E-s173854--b0ee971ac9b86c49c09ab805aeb48d01.nii.gz

OHSU/sub-0050153/mri/anatomy3_sub-0050153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

OHSU/sub-0050153/mri/anatomy3_sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jX/wq/MD5E-s124831--37222e8780947361e3d8a846c0bed819.nii.gz/MD5E-s124831--37222e8780947361e3d8a846c0bed819.nii.gz

OHSU/sub-0050153/mri/anon_misub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xp/96/MD5E-s7579246--8333a22196720cfd77c9c02c8173a59d.nii.gz/MD5E-s7579246--8333a22196720cfd77c9c02c8173a59d.nii.gz

OHSU/sub-0050153/mri/anon_msub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G9/6f/MD5E-s8201780--dc6b88bc203b3792f1e0d0ba4d66f9d6.nii.gz/MD5E-s8201780--dc6b88bc203b3792f1e0d0ba4d66f9d6.nii.gz

OHSU/sub-0050153/mri/cat_sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6f/k2/MD5E-s89220--c41302b99835f664367d91634fcabd02.nii.gz/MD5E-s89220--c41302b99835f664367d91634fcabd02.nii.gz

OHSU/sub-0050153/mri/cobra_sub-0050153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

OHSU/sub-0050153/mri/cobra_sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4w/Wp/MD5E-s42658--0584004f6d99feab51683ac4c20255f6.nii.gz/MD5E-s42658--0584004f6d99feab51683ac4c20255f6.nii.gz

OHSU/sub-0050153/mri/hammers_sub-0050153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

OHSU/sub-0050153/mri/hammers_sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qk/Vf/MD5E-s136433--f4e14df6629b264a70da93948ea45685.nii.gz/MD5E-s136433--f4e14df6629b264a70da93948ea45685.nii.gz

OHSU/sub-0050153/mri/ibsr_sub-0050153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

OHSU/sub-0050153/mri/ibsr_sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6w/jv/MD5E-s142280--c9515e47d8e864badc27879019689bb4.nii.gz/MD5E-s142280--c9515e47d8e864badc27879019689bb4.nii.gz

OHSU/sub-0050153/mri/it_sub-0050153_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/m8/5q/MD5E-s282--c964b1f01501c5164c9f7a73dfcd2001.mat/MD5E-s282--c964b1f01501c5164c9f7a73dfcd2001.mat

OHSU/sub-0050153/mri/it_sub-0050153_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wg/j6/MD5E-s283--60610eacb7e2439f08a14d3c27b9d5df.mat/MD5E-s283--60610eacb7e2439f08a14d3c27b9d5df.mat

OHSU/sub-0050153/mri/iy_sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wp/fZ/MD5E-s39619212--a3483e99aa045c6a751288a0333437a7.nii.gz/MD5E-s39619212--a3483e99aa045c6a751288a0333437a7.nii.gz

OHSU/sub-0050153/mri/julichbrain_sub-0050153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

OHSU/sub-0050153/mri/julichbrain_sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j7/Mz/MD5E-s184246--8f8cdccd8ff0e827913a1049a458bfc4.nii.gz/MD5E-s184246--8f8cdccd8ff0e827913a1049a458bfc4.nii.gz

OHSU/sub-0050153/mri/lpba40_sub-0050153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

OHSU/sub-0050153/mri/lpba40_sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/02/kG/MD5E-s134031--3a4a39260edf14500df0be9e6ec67a0f.nii.gz/MD5E-s134031--3a4a39260edf14500df0be9e6ec67a0f.nii.gz

OHSU/sub-0050153/mri/m0wp1sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GK/Wf/MD5E-s2592610--3ffd8e7814164a371c065006c19c0641.nii.gz/MD5E-s2592610--3ffd8e7814164a371c065006c19c0641.nii.gz

OHSU/sub-0050153/mri/m0wp2sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050153/mri/m0wp3sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mj/pK/MD5E-s2466971--e16d30ad1ca235c663ff4d7ee51fd38c.nii.gz/MD5E-s2466971--e16d30ad1ca235c663ff4d7ee51fd38c.nii.gz

OHSU/sub-0050153/mri/mori_sub-0050153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

OHSU/sub-0050153/mri/mori_sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050153/mri/mwp1sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4F/qp/MD5E-s2600556--7f99248d980e8dd12fb8706bdf3fdc57.nii.gz/MD5E-s2600556--7f99248d980e8dd12fb8706bdf3fdc57.nii.gz

OHSU/sub-0050153/mri/mwp2sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2V/1K/MD5E-s2280727--be77b37efc2a564b9051f05c4d8de436.nii.gz/MD5E-s2280727--be77b37efc2a564b9051f05c4d8de436.nii.gz

OHSU/sub-0050153/mri/mwp3sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G5/w7/MD5E-s2466237--5bfa01d6efd7a2b92f408cd2e74c6230.nii.gz/MD5E-s2466237--5bfa01d6efd7a2b92f408cd2e74c6230.nii.gz

OHSU/sub-0050153/mri/neuromorphometrics_sub-0050153_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

OHSU/sub-0050153/mri/neuromorphometrics_sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050153/mri/p0sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vW/JJ/MD5E-s547275--6469e2cee38e5ef50dd8f62a4cf5d923.nii.gz/MD5E-s547275--6469e2cee38e5ef50dd8f62a4cf5d923.nii.gz

OHSU/sub-0050153/mri/p1sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fk/F2/MD5E-s582924--c62aff662666754435cb12fec1442b22.nii.gz/MD5E-s582924--c62aff662666754435cb12fec1442b22.nii.gz

OHSU/sub-0050153/mri/p2sub-0050153_T1w.nii.gz

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OHSU/sub-0050153/mri/p3sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050153/mri/rp1sub-0050153_T1w_affine.nii.gz

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OHSU/sub-0050153/mri/rp2sub-0050153_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5F/Vg/MD5E-s302265--b2b90b81556d1f5f12ba2fda41d8c64f.nii.gz/MD5E-s302265--b2b90b81556d1f5f12ba2fda41d8c64f.nii.gz

OHSU/sub-0050153/mri/rp3sub-0050153_T1w_affine.nii.gz

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OHSU/sub-0050153/mri/t_sub-0050153_T1w_affine_reorient.mat

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OHSU/sub-0050153/mri/t_sub-0050153_T1w_rigid_reorient.mat

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OHSU/sub-0050153/mri/thalamus_sub-0050153_T1w.csv

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OHSU/sub-0050153/mri/thalamus_sub-0050153_T1w.nii.gz

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OHSU/sub-0050153/mri/wj_sub-0050153_T1w.nii.gz

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OHSU/sub-0050153/mri/wmisub-0050153_T1w.nii.gz

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OHSU/sub-0050153/mri/wmsub-0050153_T1w.nii.gz

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OHSU/sub-0050153/mri/wp0sub-0050153_T1w.nii.gz

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OHSU/sub-0050153/mri/wp1sub-0050153_T1w.nii.gz

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OHSU/sub-0050153/mri/wp2sub-0050153_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050153/mri/wp3sub-0050153_T1w.nii.gz

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