[DATALAD RUNCMD] Compute UM_1/sub-0050331

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050331/anat/sub-0050331_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050331"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050331/label/catROI_sub-0050331_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/74/zW/MD5E-s61430--69aa234f90f10801f395026959bb34a6.mat/MD5E-s61430--69aa234f90f10801f395026959bb34a6.mat

UM_1/sub-0050331/label/catROI_sub-0050331_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/5M/38/MD5E-s189069--055ade292aff9ad8dc51495bb725276f.xml/MD5E-s189069--055ade292aff9ad8dc51495bb725276f.xml

UM_1/sub-0050331/label/catROIs_sub-0050331_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/7V/Fx/MD5E-s120076--939a5409c19fdbfd08e7f43fab867540.mat/MD5E-s120076--939a5409c19fdbfd08e7f43fab867540.mat

UM_1/sub-0050331/label/catROIs_sub-0050331_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/w5/GF/MD5E-s332124--e379b4c4779f8736158b3740d173beaf.xml/MD5E-s332124--e379b4c4779f8736158b3740d173beaf.xml

UM_1/sub-0050331/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050331_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050331/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050331_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kK/xQ/MD5E-s134758--5ce1f7e12f7a3a5a81211f0402dc76d0.nii.gz/MD5E-s134758--5ce1f7e12f7a3a5a81211f0402dc76d0.nii.gz

UM_1/sub-0050331/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050331_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050331/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050331_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mf/G8/MD5E-s150987--fdc73f9185eff7ae4b42aebbfafe1c76.nii.gz/MD5E-s150987--fdc73f9185eff7ae4b42aebbfafe1c76.nii.gz

UM_1/sub-0050331/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050331_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050331/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050331_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jQ/W5/MD5E-s190333--dd76fa469860758f024cff8cf8a68aaf.nii.gz/MD5E-s190333--dd76fa469860758f024cff8cf8a68aaf.nii.gz

UM_1/sub-0050331/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050331_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050331/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050331_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x9/Q4/MD5E-s212065--4b42333fe4556b06ec0953a3f158b9b7.nii.gz/MD5E-s212065--4b42333fe4556b06ec0953a3f158b9b7.nii.gz

UM_1/sub-0050331/mri/Tian_Subcortex_S2_7T_sub-0050331_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050331/mri/Tian_Subcortex_S2_7T_sub-0050331_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mM/Vg/MD5E-s17193--46390dd75833f565c6edceb97f9a5fc2.nii.gz/MD5E-s17193--46390dd75833f565c6edceb97f9a5fc2.nii.gz

UM_1/sub-0050331/mri/aal3_sub-0050331_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050331/mri/aal3_sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/anatomy3_sub-0050331_T1w.csv

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UM_1/sub-0050331/mri/anatomy3_sub-0050331_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F5/81/MD5E-s108669--d1c084b6032c25d474108380e4c9c1f5.nii.gz/MD5E-s108669--d1c084b6032c25d474108380e4c9c1f5.nii.gz

UM_1/sub-0050331/mri/anon_misub-0050331_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050331/mri/anon_msub-0050331_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pq/G8/MD5E-s6851184--fa6921e2e22f7a897cf037b4ba34ac21.nii.gz/MD5E-s6851184--fa6921e2e22f7a897cf037b4ba34ac21.nii.gz

UM_1/sub-0050331/mri/cat_sub-0050331_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pJ/zz/MD5E-s83024--07c2aa4792ab2c76711f327893a29a5d.nii.gz/MD5E-s83024--07c2aa4792ab2c76711f327893a29a5d.nii.gz

UM_1/sub-0050331/mri/cobra_sub-0050331_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050331/mri/cobra_sub-0050331_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kk/88/MD5E-s35912--5df1778e0fbab4a11d67869ab3545f87.nii.gz/MD5E-s35912--5df1778e0fbab4a11d67869ab3545f87.nii.gz

UM_1/sub-0050331/mri/hammers_sub-0050331_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050331/mri/hammers_sub-0050331_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050331/mri/ibsr_sub-0050331_T1w.csv

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UM_1/sub-0050331/mri/ibsr_sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/it_sub-0050331_T1w_affine_reorient.mat

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+../../../.git/annex/objects/W6/Mx/MD5E-s284--31c7cbf61c3cadf6cde263386a9431cc.mat/MD5E-s284--31c7cbf61c3cadf6cde263386a9431cc.mat

UM_1/sub-0050331/mri/it_sub-0050331_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/F2/p5/MD5E-s283--6495c50a66ba05ec5c43fe823914fff4.mat/MD5E-s283--6495c50a66ba05ec5c43fe823914fff4.mat

UM_1/sub-0050331/mri/iy_sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/julichbrain_sub-0050331_T1w.csv

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UM_1/sub-0050331/mri/julichbrain_sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/lpba40_sub-0050331_T1w.csv

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UM_1/sub-0050331/mri/lpba40_sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/m0wp1sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/m0wp2sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/m0wp3sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/mori_sub-0050331_T1w.csv

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UM_1/sub-0050331/mri/mori_sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/mwp1sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/mwp2sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/mwp3sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/neuromorphometrics_sub-0050331_T1w.csv

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UM_1/sub-0050331/mri/neuromorphometrics_sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/p0sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/p1sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/p2sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/p3sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/rp1sub-0050331_T1w_affine.nii.gz

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UM_1/sub-0050331/mri/rp2sub-0050331_T1w_affine.nii.gz

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UM_1/sub-0050331/mri/rp3sub-0050331_T1w_affine.nii.gz

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UM_1/sub-0050331/mri/t_sub-0050331_T1w_affine_reorient.mat

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UM_1/sub-0050331/mri/t_sub-0050331_T1w_rigid_reorient.mat

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UM_1/sub-0050331/mri/thalamus_sub-0050331_T1w.csv

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UM_1/sub-0050331/mri/thalamus_sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/wj_sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/wmisub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/wmsub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/wp0sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/wp1sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/wp2sub-0050331_T1w.nii.gz

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UM_1/sub-0050331/mri/wp3sub-0050331_T1w.nii.gz

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