[DATALAD RUNCMD] Compute Olin/sub-0050113

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Olin/sub-0050113/anat/sub-0050113_T1w.nii.gz"
 ],
 "outputs": [
  "Olin/sub-0050113"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Olin/sub-0050113/label/catROI_sub-0050113_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/VX/W4/MD5E-s61276--ddaa6fc3828fae625d0ab33bdda4c905.mat/MD5E-s61276--ddaa6fc3828fae625d0ab33bdda4c905.mat

Olin/sub-0050113/label/catROI_sub-0050113_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/05/kg/MD5E-s188938--09e93c05c6f252f27690e09f423335c3.xml/MD5E-s188938--09e93c05c6f252f27690e09f423335c3.xml

Olin/sub-0050113/label/catROIs_sub-0050113_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kv/vZ/MD5E-s120204--b8d878a2581f553bdb946892d8ad2424.mat/MD5E-s120204--b8d878a2581f553bdb946892d8ad2424.mat

Olin/sub-0050113/label/catROIs_sub-0050113_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/2P/F9/MD5E-s332110--11b551e97a4e24201cb1d3a3f209bcf4.xml/MD5E-s332110--11b551e97a4e24201cb1d3a3f209bcf4.xml

Olin/sub-0050113/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050113_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Olin/sub-0050113/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050113_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p7/GG/MD5E-s167423--9ad26d68b5c576cb19577e9cbff14ed3.nii.gz/MD5E-s167423--9ad26d68b5c576cb19577e9cbff14ed3.nii.gz

Olin/sub-0050113/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050113_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Olin/sub-0050113/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050113_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/15/fW/MD5E-s186650--1719f2d1aac1d7df9a23567f0da4fbb9.nii.gz/MD5E-s186650--1719f2d1aac1d7df9a23567f0da4fbb9.nii.gz

Olin/sub-0050113/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050113_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Olin/sub-0050113/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050113_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/61/zJ/MD5E-s239332--1d234a452d26afbf4bfd533dd8a27ae9.nii.gz/MD5E-s239332--1d234a452d26afbf4bfd533dd8a27ae9.nii.gz

Olin/sub-0050113/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050113_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Olin/sub-0050113/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050113_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JQ/g5/MD5E-s268689--934e2419a960a2936a7ff6fbd9cd8e3d.nii.gz/MD5E-s268689--934e2419a960a2936a7ff6fbd9cd8e3d.nii.gz

Olin/sub-0050113/mri/Tian_Subcortex_S2_7T_sub-0050113_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Olin/sub-0050113/mri/Tian_Subcortex_S2_7T_sub-0050113_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W4/0Q/MD5E-s22738--7753bde1711760f9f691e3987db768b7.nii.gz/MD5E-s22738--7753bde1711760f9f691e3987db768b7.nii.gz

Olin/sub-0050113/mri/aal3_sub-0050113_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Olin/sub-0050113/mri/aal3_sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/anatomy3_sub-0050113_T1w.csv

@@ -0,0 +1 @@
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Olin/sub-0050113/mri/anatomy3_sub-0050113_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GJ/8w/MD5E-s136310--caefd122dbd45cdc8133d7a727bfbbae.nii.gz/MD5E-s136310--caefd122dbd45cdc8133d7a727bfbbae.nii.gz

Olin/sub-0050113/mri/anon_misub-0050113_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/01/9Z/MD5E-s4447155--19a288f5c39d3c1859bc4f8d7b4dc3de.nii.gz/MD5E-s4447155--19a288f5c39d3c1859bc4f8d7b4dc3de.nii.gz

Olin/sub-0050113/mri/anon_msub-0050113_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pK/Q6/MD5E-s9441773--9396e583c8502c6d727d8aefdcc39267.nii.gz/MD5E-s9441773--9396e583c8502c6d727d8aefdcc39267.nii.gz

Olin/sub-0050113/mri/cat_sub-0050113_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mw/jq/MD5E-s97639--9370d4b3e027f292a44261eee38a46cc.nii.gz/MD5E-s97639--9370d4b3e027f292a44261eee38a46cc.nii.gz

Olin/sub-0050113/mri/cobra_sub-0050113_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Olin/sub-0050113/mri/cobra_sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/hammers_sub-0050113_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Olin/sub-0050113/mri/hammers_sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/ibsr_sub-0050113_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Olin/sub-0050113/mri/ibsr_sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/it_sub-0050113_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8f/fj/MD5E-s283--b0c3103620030dd14cc74bdac1a66455.mat/MD5E-s283--b0c3103620030dd14cc74bdac1a66455.mat

Olin/sub-0050113/mri/it_sub-0050113_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/p8/5p/MD5E-s283--2a5b67a32d9a1e7b602121a7c7b4006b.mat/MD5E-s283--2a5b67a32d9a1e7b602121a7c7b4006b.mat

Olin/sub-0050113/mri/iy_sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/julichbrain_sub-0050113_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Olin/sub-0050113/mri/julichbrain_sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/lpba40_sub-0050113_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Olin/sub-0050113/mri/lpba40_sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/m0wp1sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/m0wp2sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/m0wp3sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/mori_sub-0050113_T1w.csv

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Olin/sub-0050113/mri/mori_sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/mwp1sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/mwp2sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/mwp3sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/neuromorphometrics_sub-0050113_T1w.csv

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Olin/sub-0050113/mri/neuromorphometrics_sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/p0sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/p1sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/p2sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/p3sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/rp1sub-0050113_T1w_affine.nii.gz

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Olin/sub-0050113/mri/rp2sub-0050113_T1w_affine.nii.gz

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Olin/sub-0050113/mri/rp3sub-0050113_T1w_affine.nii.gz

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Olin/sub-0050113/mri/t_sub-0050113_T1w_affine_reorient.mat

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Olin/sub-0050113/mri/t_sub-0050113_T1w_rigid_reorient.mat

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Olin/sub-0050113/mri/thalamus_sub-0050113_T1w.csv

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Olin/sub-0050113/mri/thalamus_sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/wj_sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/wmisub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/wmsub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/wp0sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/wp1sub-0050113_T1w.nii.gz

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Olin/sub-0050113/mri/wp2sub-0050113_T1w.nii.gz

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