[DATALAD RUNCMD] Compute CMU_a/sub-0050654

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/CMU_a/sub-0050654/anat/sub-0050654_T1w.nii.gz"
 ],
 "outputs": [
  "CMU_a/sub-0050654"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

CMU_a/sub-0050654/label/catROI_sub-0050654_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/9g/5J/MD5E-s57871--84d49c10da13897d9cf75caa6d7e6248.mat/MD5E-s57871--84d49c10da13897d9cf75caa6d7e6248.mat

CMU_a/sub-0050654/label/catROI_sub-0050654_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/1k/Xm/MD5E-s188732--9133a8e8e9fd0dc545d532a92c9e8e55.xml/MD5E-s188732--9133a8e8e9fd0dc545d532a92c9e8e55.xml

CMU_a/sub-0050654/label/catROIs_sub-0050654_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xK/23/MD5E-s120040--dea36dd347d3ad346f6f2a34063ad4a3.mat/MD5E-s120040--dea36dd347d3ad346f6f2a34063ad4a3.mat

CMU_a/sub-0050654/label/catROIs_sub-0050654_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/FF/7j/MD5E-s332079--7ad985c2504d4af88773e4afb72d36a6.xml/MD5E-s332079--7ad985c2504d4af88773e4afb72d36a6.xml

CMU_a/sub-0050654/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050654_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

CMU_a/sub-0050654/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VX/Fj/MD5E-s171638--1de9c42d097c51576d1620cb8debfb33.nii.gz/MD5E-s171638--1de9c42d097c51576d1620cb8debfb33.nii.gz

CMU_a/sub-0050654/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050654_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

CMU_a/sub-0050654/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qM/Z0/MD5E-s192910--75fc9e1fcc8340afb4845577fe47df81.nii.gz/MD5E-s192910--75fc9e1fcc8340afb4845577fe47df81.nii.gz

CMU_a/sub-0050654/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050654_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

CMU_a/sub-0050654/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1k/v4/MD5E-s253259--085b33549751e4ba1bc51d268123cb1b.nii.gz/MD5E-s253259--085b33549751e4ba1bc51d268123cb1b.nii.gz

CMU_a/sub-0050654/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050654_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

CMU_a/sub-0050654/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3m/6X/MD5E-s284057--43dce91ffe4736853ba9f48cf9a5c3f0.nii.gz/MD5E-s284057--43dce91ffe4736853ba9f48cf9a5c3f0.nii.gz

CMU_a/sub-0050654/mri/Tian_Subcortex_S2_7T_sub-0050654_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

CMU_a/sub-0050654/mri/Tian_Subcortex_S2_7T_sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zv/79/MD5E-s21517--67f5d468fb5d9492719fb1f0d1d51689.nii.gz/MD5E-s21517--67f5d468fb5d9492719fb1f0d1d51689.nii.gz

CMU_a/sub-0050654/mri/aal3_sub-0050654_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

CMU_a/sub-0050654/mri/aal3_sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fx/2G/MD5E-s196254--7d08b7b1da0b56bd46eb1a8ccb8bdc1f.nii.gz/MD5E-s196254--7d08b7b1da0b56bd46eb1a8ccb8bdc1f.nii.gz

CMU_a/sub-0050654/mri/anatomy3_sub-0050654_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

CMU_a/sub-0050654/mri/anatomy3_sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gw/j1/MD5E-s139744--c14248ee79b1249779cd34fdbdc33d17.nii.gz/MD5E-s139744--c14248ee79b1249779cd34fdbdc33d17.nii.gz

CMU_a/sub-0050654/mri/anon_misub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FF/86/MD5E-s8226909--273abb9f66a8bb3a81a482132d0aa07e.nii.gz/MD5E-s8226909--273abb9f66a8bb3a81a482132d0aa07e.nii.gz

CMU_a/sub-0050654/mri/anon_msub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V1/Wf/MD5E-s8237486--8f122a43ab604a31a067506eb3f06ee0.nii.gz/MD5E-s8237486--8f122a43ab604a31a067506eb3f06ee0.nii.gz

CMU_a/sub-0050654/mri/cat_sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4G/21/MD5E-s102200--08433f4d21fb67714b7feedeef2521e7.nii.gz/MD5E-s102200--08433f4d21fb67714b7feedeef2521e7.nii.gz

CMU_a/sub-0050654/mri/cobra_sub-0050654_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

CMU_a/sub-0050654/mri/cobra_sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p8/P0/MD5E-s46304--8ede80c59c7a5259a95c0fe91864048d.nii.gz/MD5E-s46304--8ede80c59c7a5259a95c0fe91864048d.nii.gz

CMU_a/sub-0050654/mri/hammers_sub-0050654_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

CMU_a/sub-0050654/mri/hammers_sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G4/Vv/MD5E-s152421--968027c1a7b15a2367c3595efdb26672.nii.gz/MD5E-s152421--968027c1a7b15a2367c3595efdb26672.nii.gz

CMU_a/sub-0050654/mri/ibsr_sub-0050654_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

CMU_a/sub-0050654/mri/ibsr_sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f6/fP/MD5E-s159934--d464c39cccea1102f550e13c690e15be.nii.gz/MD5E-s159934--d464c39cccea1102f550e13c690e15be.nii.gz

CMU_a/sub-0050654/mri/it_sub-0050654_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/84/PP/MD5E-s283--751ee7294d0345884bd064c6e81e5157.mat/MD5E-s283--751ee7294d0345884bd064c6e81e5157.mat

CMU_a/sub-0050654/mri/it_sub-0050654_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/F8/P5/MD5E-s284--7aec1be650272536fa04535b0bbf75f8.mat/MD5E-s284--7aec1be650272536fa04535b0bbf75f8.mat

CMU_a/sub-0050654/mri/iy_sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q9/FV/MD5E-s46469877--ad5aac107c55764c683594e913151b69.nii.gz/MD5E-s46469877--ad5aac107c55764c683594e913151b69.nii.gz

CMU_a/sub-0050654/mri/julichbrain_sub-0050654_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

CMU_a/sub-0050654/mri/julichbrain_sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V4/82/MD5E-s205989--4cf6e5669d59e211ecf10430f6f7ee9d.nii.gz/MD5E-s205989--4cf6e5669d59e211ecf10430f6f7ee9d.nii.gz

CMU_a/sub-0050654/mri/lpba40_sub-0050654_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

CMU_a/sub-0050654/mri/lpba40_sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8G/x9/MD5E-s149196--9d5efb20401756a38be1965be0d5f792.nii.gz/MD5E-s149196--9d5efb20401756a38be1965be0d5f792.nii.gz

CMU_a/sub-0050654/mri/m0wp1sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z0/34/MD5E-s2572723--e2e699161c3bb6efa9d9233b981736ad.nii.gz/MD5E-s2572723--e2e699161c3bb6efa9d9233b981736ad.nii.gz

CMU_a/sub-0050654/mri/m0wp2sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4X/J7/MD5E-s2328890--b0182ae2d7c3f06a22408626649e668e.nii.gz/MD5E-s2328890--b0182ae2d7c3f06a22408626649e668e.nii.gz

CMU_a/sub-0050654/mri/m0wp3sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FJ/k6/MD5E-s2475480--3e3c79b073154e6f92be1d674dac1e54.nii.gz/MD5E-s2475480--3e3c79b073154e6f92be1d674dac1e54.nii.gz

CMU_a/sub-0050654/mri/mori_sub-0050654_T1w.csv

@@ -0,0 +1 @@
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CMU_a/sub-0050654/mri/mori_sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050654/mri/mwp1sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4w/9K/MD5E-s2572727--e8ad444c58fbe3654ddb86a68cecf9e8.nii.gz/MD5E-s2572727--e8ad444c58fbe3654ddb86a68cecf9e8.nii.gz

CMU_a/sub-0050654/mri/mwp2sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mX/1q/MD5E-s2322700--77b3e5df046bfc9a0a11084d9111f122.nii.gz/MD5E-s2322700--77b3e5df046bfc9a0a11084d9111f122.nii.gz

CMU_a/sub-0050654/mri/mwp3sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f7/mW/MD5E-s2471684--70fe6271b280254728bbc25189eb1316.nii.gz/MD5E-s2471684--70fe6271b280254728bbc25189eb1316.nii.gz

CMU_a/sub-0050654/mri/neuromorphometrics_sub-0050654_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

CMU_a/sub-0050654/mri/neuromorphometrics_sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qm/1q/MD5E-s208257--6bd3385df0810d7df57f3e043fb3c379.nii.gz/MD5E-s208257--6bd3385df0810d7df57f3e043fb3c379.nii.gz

CMU_a/sub-0050654/mri/p0sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XJ/3j/MD5E-s656110--de5ac9ec24eb0d23780ed56ec735e412.nii.gz/MD5E-s656110--de5ac9ec24eb0d23780ed56ec735e412.nii.gz

CMU_a/sub-0050654/mri/p1sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mJ/Jw/MD5E-s699068--df769a9ffc6750fb74627909a94107b3.nii.gz/MD5E-s699068--df769a9ffc6750fb74627909a94107b3.nii.gz

CMU_a/sub-0050654/mri/p2sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050654/mri/p3sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050654/mri/rp1sub-0050654_T1w_affine.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050654/mri/rp2sub-0050654_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/v3/J3/MD5E-s314154--6531e9c180f009d38081f6d49d92bc7a.nii.gz/MD5E-s314154--6531e9c180f009d38081f6d49d92bc7a.nii.gz

CMU_a/sub-0050654/mri/rp3sub-0050654_T1w_affine.nii.gz

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CMU_a/sub-0050654/mri/t_sub-0050654_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fk/JZ/MD5E-s284--8d4a92c9ba04f355bdc57a47e3fcc64f.mat/MD5E-s284--8d4a92c9ba04f355bdc57a47e3fcc64f.mat

CMU_a/sub-0050654/mri/t_sub-0050654_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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CMU_a/sub-0050654/mri/thalamus_sub-0050654_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

CMU_a/sub-0050654/mri/thalamus_sub-0050654_T1w.nii.gz

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CMU_a/sub-0050654/mri/wj_sub-0050654_T1w.nii.gz

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CMU_a/sub-0050654/mri/wmisub-0050654_T1w.nii.gz

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CMU_a/sub-0050654/mri/wmsub-0050654_T1w.nii.gz

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CMU_a/sub-0050654/mri/wp0sub-0050654_T1w.nii.gz

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CMU_a/sub-0050654/mri/wp1sub-0050654_T1w.nii.gz

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CMU_a/sub-0050654/mri/wp2sub-0050654_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050654/mri/wp3sub-0050654_T1w.nii.gz

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