[DATALAD RUNCMD] Compute Pitt/sub-0050007

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Pitt/sub-0050007/anat/sub-0050007_T1w.nii.gz"
 ],
 "outputs": [
  "Pitt/sub-0050007"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Pitt/sub-0050007/label/catROI_sub-0050007_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/mq/zk/MD5E-s61379--53eee1cc60a427a3dfe594a743bd1dd2.mat/MD5E-s61379--53eee1cc60a427a3dfe594a743bd1dd2.mat

Pitt/sub-0050007/label/catROI_sub-0050007_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/mW/Wf/MD5E-s188456--1c61f04b82de827be704d09b22ae05f0.xml/MD5E-s188456--1c61f04b82de827be704d09b22ae05f0.xml

Pitt/sub-0050007/label/catROIs_sub-0050007_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/zW/Wq/MD5E-s120169--fa50ec9f138fc82ce057268a6715074c.mat/MD5E-s120169--fa50ec9f138fc82ce057268a6715074c.mat

Pitt/sub-0050007/label/catROIs_sub-0050007_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/zF/x1/MD5E-s332176--7c75135c05faff3621089e003888eda8.xml/MD5E-s332176--7c75135c05faff3621089e003888eda8.xml

Pitt/sub-0050007/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050007_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Pitt/sub-0050007/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/93/qm/MD5E-s180361--8914ed195a66ea11785f4b34ffd95c47.nii.gz/MD5E-s180361--8914ed195a66ea11785f4b34ffd95c47.nii.gz

Pitt/sub-0050007/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050007_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Pitt/sub-0050007/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P2/k4/MD5E-s202900--a88aa2607d687a17338025ab977b0db5.nii.gz/MD5E-s202900--a88aa2607d687a17338025ab977b0db5.nii.gz

Pitt/sub-0050007/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050007_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Pitt/sub-0050007/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MF/0j/MD5E-s272484--6ee69d00f4a030ca6d5ad7c3e0ac4ccb.nii.gz/MD5E-s272484--6ee69d00f4a030ca6d5ad7c3e0ac4ccb.nii.gz

Pitt/sub-0050007/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050007_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Pitt/sub-0050007/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/90/3x/MD5E-s303593--b14de2f09f0c80679de71294fe9bed06.nii.gz/MD5E-s303593--b14de2f09f0c80679de71294fe9bed06.nii.gz

Pitt/sub-0050007/mri/Tian_Subcortex_S2_7T_sub-0050007_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Pitt/sub-0050007/mri/Tian_Subcortex_S2_7T_sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7W/X6/MD5E-s26174--6bab6eef169c7633383750a2793f216a.nii.gz/MD5E-s26174--6bab6eef169c7633383750a2793f216a.nii.gz

Pitt/sub-0050007/mri/aal3_sub-0050007_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Pitt/sub-0050007/mri/aal3_sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p0/3F/MD5E-s204741--2b99840614a51f68b4c358e440da4b6a.nii.gz/MD5E-s204741--2b99840614a51f68b4c358e440da4b6a.nii.gz

Pitt/sub-0050007/mri/anatomy3_sub-0050007_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Pitt/sub-0050007/mri/anatomy3_sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k6/k6/MD5E-s149262--a546aa65e633a31ad4ac6912a6510acb.nii.gz/MD5E-s149262--a546aa65e633a31ad4ac6912a6510acb.nii.gz

Pitt/sub-0050007/mri/anon_misub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/v0/7X/MD5E-s5133994--4ddb8501992abf4090583ba3ba44496d.nii.gz/MD5E-s5133994--4ddb8501992abf4090583ba3ba44496d.nii.gz

Pitt/sub-0050007/mri/anon_msub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q2/mZ/MD5E-s13168376--8c0a8423d5b8f7859be889d1a531a40a.nii.gz/MD5E-s13168376--8c0a8423d5b8f7859be889d1a531a40a.nii.gz

Pitt/sub-0050007/mri/cat_sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gm/48/MD5E-s107333--33c2ce3c78259cb72a82572908ab0435.nii.gz/MD5E-s107333--33c2ce3c78259cb72a82572908ab0435.nii.gz

Pitt/sub-0050007/mri/cobra_sub-0050007_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Pitt/sub-0050007/mri/cobra_sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mW/90/MD5E-s51343--0ccb4a21d075f54e0aa4cf88513bde8a.nii.gz/MD5E-s51343--0ccb4a21d075f54e0aa4cf88513bde8a.nii.gz

Pitt/sub-0050007/mri/hammers_sub-0050007_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Pitt/sub-0050007/mri/hammers_sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mm/K9/MD5E-s159112--8b1527f4a7f4e9bd42f008389ac6ead3.nii.gz/MD5E-s159112--8b1527f4a7f4e9bd42f008389ac6ead3.nii.gz

Pitt/sub-0050007/mri/ibsr_sub-0050007_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Pitt/sub-0050007/mri/ibsr_sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9m/55/MD5E-s169240--91b00ac00c7cb2b6544702baf435f1d5.nii.gz/MD5E-s169240--91b00ac00c7cb2b6544702baf435f1d5.nii.gz

Pitt/sub-0050007/mri/it_sub-0050007_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/W5/KG/MD5E-s283--e462e095a554056402692bdfdcd5e9c6.mat/MD5E-s283--e462e095a554056402692bdfdcd5e9c6.mat

Pitt/sub-0050007/mri/it_sub-0050007_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vj/Pz/MD5E-s283--6d04d77fcdd0b615667ffd82dc5eeaac.mat/MD5E-s283--6d04d77fcdd0b615667ffd82dc5eeaac.mat

Pitt/sub-0050007/mri/iy_sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GQ/gM/MD5E-s51035031--35461bfdce57f05d7865d73bac905035.nii.gz/MD5E-s51035031--35461bfdce57f05d7865d73bac905035.nii.gz

Pitt/sub-0050007/mri/julichbrain_sub-0050007_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Pitt/sub-0050007/mri/julichbrain_sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5W/83/MD5E-s218075--1602816c7d0608a7438fdd922a4c9103.nii.gz/MD5E-s218075--1602816c7d0608a7438fdd922a4c9103.nii.gz

Pitt/sub-0050007/mri/lpba40_sub-0050007_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Pitt/sub-0050007/mri/lpba40_sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zZ/z9/MD5E-s155870--53a0af2098e97890ce8dd3c37d5dba95.nii.gz/MD5E-s155870--53a0af2098e97890ce8dd3c37d5dba95.nii.gz

Pitt/sub-0050007/mri/m0wp1sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/94/M6/MD5E-s2584502--ddcf9364bba77372adb050871bcf0b92.nii.gz/MD5E-s2584502--ddcf9364bba77372adb050871bcf0b92.nii.gz

Pitt/sub-0050007/mri/m0wp2sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jw/Xw/MD5E-s2294739--3f3843ec7f6f51fa8f69478c656d87fe.nii.gz/MD5E-s2294739--3f3843ec7f6f51fa8f69478c656d87fe.nii.gz

Pitt/sub-0050007/mri/m0wp3sub-0050007_T1w.nii.gz

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Pitt/sub-0050007/mri/mori_sub-0050007_T1w.csv

@@ -0,0 +1 @@
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Pitt/sub-0050007/mri/mori_sub-0050007_T1w.nii.gz

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Pitt/sub-0050007/mri/mwp1sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050007/mri/mwp2sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050007/mri/mwp3sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8K/8m/MD5E-s2431142--ab06a44441b85be05e3a3862a5864d12.nii.gz/MD5E-s2431142--ab06a44441b85be05e3a3862a5864d12.nii.gz

Pitt/sub-0050007/mri/neuromorphometrics_sub-0050007_T1w.csv

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Pitt/sub-0050007/mri/neuromorphometrics_sub-0050007_T1w.nii.gz

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+../../../.git/annex/objects/V2/2p/MD5E-s219529--e4f66742eb2d15290787aa3fe9c7b695.nii.gz/MD5E-s219529--e4f66742eb2d15290787aa3fe9c7b695.nii.gz

Pitt/sub-0050007/mri/p0sub-0050007_T1w.nii.gz

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Pitt/sub-0050007/mri/p1sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jf/fX/MD5E-s780748--1fdfa82a402cc64fdf58a3c2f8c06831.nii.gz/MD5E-s780748--1fdfa82a402cc64fdf58a3c2f8c06831.nii.gz

Pitt/sub-0050007/mri/p2sub-0050007_T1w.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050007/mri/p3sub-0050007_T1w.nii.gz

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Pitt/sub-0050007/mri/rp1sub-0050007_T1w_affine.nii.gz

@@ -0,0 +1 @@
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Pitt/sub-0050007/mri/rp2sub-0050007_T1w_affine.nii.gz

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Pitt/sub-0050007/mri/rp3sub-0050007_T1w_affine.nii.gz

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Pitt/sub-0050007/mri/t_sub-0050007_T1w_affine_reorient.mat

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Pitt/sub-0050007/mri/t_sub-0050007_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/5x/Pj/MD5E-s283--6cefbf456278f6699ff48c1f86d7661d.mat/MD5E-s283--6cefbf456278f6699ff48c1f86d7661d.mat

Pitt/sub-0050007/mri/thalamus_sub-0050007_T1w.csv

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Pitt/sub-0050007/mri/thalamus_sub-0050007_T1w.nii.gz

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Pitt/sub-0050007/mri/wj_sub-0050007_T1w.nii.gz

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Pitt/sub-0050007/mri/wmisub-0050007_T1w.nii.gz

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Pitt/sub-0050007/mri/wmsub-0050007_T1w.nii.gz

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Pitt/sub-0050007/mri/wp0sub-0050007_T1w.nii.gz

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Pitt/sub-0050007/mri/wp1sub-0050007_T1w.nii.gz

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Pitt/sub-0050007/mri/wp2sub-0050007_T1w.nii.gz

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Pitt/sub-0050007/mri/wp3sub-0050007_T1w.nii.gz

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Pitt/sub-0050007/mri/y_sub-0050007_T1w.nii.gz

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