[DATALAD RUNCMD] Compute OHSU/sub-0050142

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/OHSU/sub-0050142/anat/sub-0050142_T1w.nii.gz"
 ],
 "outputs": [
  "OHSU/sub-0050142"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

OHSU/sub-0050142/label/catROI_sub-0050142_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qw/Xv/MD5E-s61395--a3d85336051b9b4402b7f7d6442c3786.mat/MD5E-s61395--a3d85336051b9b4402b7f7d6442c3786.mat

OHSU/sub-0050142/label/catROI_sub-0050142_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/v0/k4/MD5E-s188831--62c4c4f646833f050b602dc9b77b6182.xml/MD5E-s188831--62c4c4f646833f050b602dc9b77b6182.xml

OHSU/sub-0050142/label/catROIs_sub-0050142_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/2F/05/MD5E-s120024--6eba4af18f045291bce8696f36af62ff.mat/MD5E-s120024--6eba4af18f045291bce8696f36af62ff.mat

OHSU/sub-0050142/label/catROIs_sub-0050142_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/6G/5M/MD5E-s332129--0b29e1f8a9f5b419eeca75a2968aa9b4.xml/MD5E-s332129--0b29e1f8a9f5b419eeca75a2968aa9b4.xml

OHSU/sub-0050142/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050142_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

OHSU/sub-0050142/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kX/Pv/MD5E-s169616--1ce3aeaf9bbd750668c29d8dfd57daa5.nii.gz/MD5E-s169616--1ce3aeaf9bbd750668c29d8dfd57daa5.nii.gz

OHSU/sub-0050142/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050142_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

OHSU/sub-0050142/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vp/Mx/MD5E-s190481--28a1d40894c902868d5e92612212d8b2.nii.gz/MD5E-s190481--28a1d40894c902868d5e92612212d8b2.nii.gz

OHSU/sub-0050142/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050142_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

OHSU/sub-0050142/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wG/ZK/MD5E-s255419--766acc5e8cd92c235343f020423f7c1c.nii.gz/MD5E-s255419--766acc5e8cd92c235343f020423f7c1c.nii.gz

OHSU/sub-0050142/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050142_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

OHSU/sub-0050142/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wF/G4/MD5E-s285984--4564c70bf5aeeec2bd78ea9805a1ff4a.nii.gz/MD5E-s285984--4564c70bf5aeeec2bd78ea9805a1ff4a.nii.gz

OHSU/sub-0050142/mri/Tian_Subcortex_S2_7T_sub-0050142_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

OHSU/sub-0050142/mri/Tian_Subcortex_S2_7T_sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/PP/j3/MD5E-s21367--1bdeb32ae4744924b59c92e029b94fb8.nii.gz/MD5E-s21367--1bdeb32ae4744924b59c92e029b94fb8.nii.gz

OHSU/sub-0050142/mri/aal3_sub-0050142_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

OHSU/sub-0050142/mri/aal3_sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/59/wk/MD5E-s192668--8ac6dc80e16c511f1c695e1a27072b99.nii.gz/MD5E-s192668--8ac6dc80e16c511f1c695e1a27072b99.nii.gz

OHSU/sub-0050142/mri/anatomy3_sub-0050142_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

OHSU/sub-0050142/mri/anatomy3_sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JW/0W/MD5E-s136953--2dfffe1594aca0752ea93e0b9f06db94.nii.gz/MD5E-s136953--2dfffe1594aca0752ea93e0b9f06db94.nii.gz

OHSU/sub-0050142/mri/anon_misub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GZ/WV/MD5E-s3899957--a779a1add083d1c5faf5c9302aae49e1.nii.gz/MD5E-s3899957--a779a1add083d1c5faf5c9302aae49e1.nii.gz

OHSU/sub-0050142/mri/anon_msub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/03/Fw/MD5E-s8865412--2859de5f7e341748909607cfb803bd68.nii.gz/MD5E-s8865412--2859de5f7e341748909607cfb803bd68.nii.gz

OHSU/sub-0050142/mri/cat_sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3V/5m/MD5E-s97197--38afe2032aeba0353ed6eac68279830e.nii.gz/MD5E-s97197--38afe2032aeba0353ed6eac68279830e.nii.gz

OHSU/sub-0050142/mri/cobra_sub-0050142_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

OHSU/sub-0050142/mri/cobra_sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4P/77/MD5E-s45002--33bde3fed22d58a91f382984e9a18354.nii.gz/MD5E-s45002--33bde3fed22d58a91f382984e9a18354.nii.gz

OHSU/sub-0050142/mri/hammers_sub-0050142_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

OHSU/sub-0050142/mri/hammers_sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vz/JZ/MD5E-s150114--a833db859949ce01ba0b392c55795aea.nii.gz/MD5E-s150114--a833db859949ce01ba0b392c55795aea.nii.gz

OHSU/sub-0050142/mri/ibsr_sub-0050142_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

OHSU/sub-0050142/mri/ibsr_sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K4/2g/MD5E-s159572--d0e879465a9ced38dd12f81d5a6ed059.nii.gz/MD5E-s159572--d0e879465a9ced38dd12f81d5a6ed059.nii.gz

OHSU/sub-0050142/mri/it_sub-0050142_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/83/F7/MD5E-s284--bc5032344f6ea31c8d31e9a4965c471c.mat/MD5E-s284--bc5032344f6ea31c8d31e9a4965c471c.mat

OHSU/sub-0050142/mri/it_sub-0050142_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/64/vV/MD5E-s284--77fca3181aae78901dba547d88d90953.mat/MD5E-s284--77fca3181aae78901dba547d88d90953.mat

OHSU/sub-0050142/mri/iy_sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VZ/zq/MD5E-s46375548--7f25d7e5766695d006be4b5fcdfa4f5a.nii.gz/MD5E-s46375548--7f25d7e5766695d006be4b5fcdfa4f5a.nii.gz

OHSU/sub-0050142/mri/julichbrain_sub-0050142_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

OHSU/sub-0050142/mri/julichbrain_sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kW/m0/MD5E-s204898--f7145930c13c7118bf43b331143e3430.nii.gz/MD5E-s204898--f7145930c13c7118bf43b331143e3430.nii.gz

OHSU/sub-0050142/mri/lpba40_sub-0050142_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

OHSU/sub-0050142/mri/lpba40_sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050142/mri/m0wp1sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qF/g6/MD5E-s2589944--ba3f6c8fc26a5bfe38346c4a75550dbb.nii.gz/MD5E-s2589944--ba3f6c8fc26a5bfe38346c4a75550dbb.nii.gz

OHSU/sub-0050142/mri/m0wp2sub-0050142_T1w.nii.gz

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OHSU/sub-0050142/mri/m0wp3sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050142/mri/mori_sub-0050142_T1w.csv

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OHSU/sub-0050142/mri/mori_sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050142/mri/mwp1sub-0050142_T1w.nii.gz

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OHSU/sub-0050142/mri/mwp2sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050142/mri/mwp3sub-0050142_T1w.nii.gz

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OHSU/sub-0050142/mri/neuromorphometrics_sub-0050142_T1w.csv

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OHSU/sub-0050142/mri/neuromorphometrics_sub-0050142_T1w.nii.gz

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OHSU/sub-0050142/mri/p0sub-0050142_T1w.nii.gz

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OHSU/sub-0050142/mri/p1sub-0050142_T1w.nii.gz

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OHSU/sub-0050142/mri/p2sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050142/mri/p3sub-0050142_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050142/mri/rp1sub-0050142_T1w_affine.nii.gz

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OHSU/sub-0050142/mri/rp2sub-0050142_T1w_affine.nii.gz

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+../../../.git/annex/objects/Pv/xX/MD5E-s306299--af36bcb70260eebdab182eb93ecf7ba4.nii.gz/MD5E-s306299--af36bcb70260eebdab182eb93ecf7ba4.nii.gz

OHSU/sub-0050142/mri/rp3sub-0050142_T1w_affine.nii.gz

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OHSU/sub-0050142/mri/t_sub-0050142_T1w_affine_reorient.mat

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OHSU/sub-0050142/mri/t_sub-0050142_T1w_rigid_reorient.mat

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OHSU/sub-0050142/mri/thalamus_sub-0050142_T1w.csv

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OHSU/sub-0050142/mri/thalamus_sub-0050142_T1w.nii.gz

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OHSU/sub-0050142/mri/wj_sub-0050142_T1w.nii.gz

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OHSU/sub-0050142/mri/wmisub-0050142_T1w.nii.gz

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OHSU/sub-0050142/mri/wmsub-0050142_T1w.nii.gz

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OHSU/sub-0050142/mri/wp0sub-0050142_T1w.nii.gz

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OHSU/sub-0050142/mri/wp1sub-0050142_T1w.nii.gz

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OHSU/sub-0050142/mri/wp2sub-0050142_T1w.nii.gz

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OHSU/sub-0050142/mri/wp3sub-0050142_T1w.nii.gz

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