[DATALAD RUNCMD] Compute CMU_b/sub-0050643

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/CMU_b/sub-0050643/anat/sub-0050643_T1w.nii.gz"
 ],
 "outputs": [
  "CMU_b/sub-0050643"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

CMU_b/sub-0050643/label/catROI_sub-0050643_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/53/37/MD5E-s57767--b9312f0e663bc48e187b1c939e693705.mat/MD5E-s57767--b9312f0e663bc48e187b1c939e693705.mat

CMU_b/sub-0050643/label/catROI_sub-0050643_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/8G/ZJ/MD5E-s188679--5db5ad9411c9ce9815aa6ed21f97b763.xml/MD5E-s188679--5db5ad9411c9ce9815aa6ed21f97b763.xml

CMU_b/sub-0050643/label/catROIs_sub-0050643_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xX/fq/MD5E-s120208--ba9c0240a6fcaf079f4f4294345f0243.mat/MD5E-s120208--ba9c0240a6fcaf079f4f4294345f0243.mat

CMU_b/sub-0050643/label/catROIs_sub-0050643_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZW/04/MD5E-s332130--33fc9b18b207a45d73a3bbe73553f5e2.xml/MD5E-s332130--33fc9b18b207a45d73a3bbe73553f5e2.xml

CMU_b/sub-0050643/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050643_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

CMU_b/sub-0050643/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z5/jf/MD5E-s166526--a2c41fade85a13a558d44d080885af88.nii.gz/MD5E-s166526--a2c41fade85a13a558d44d080885af88.nii.gz

CMU_b/sub-0050643/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050643_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

CMU_b/sub-0050643/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J8/5V/MD5E-s185820--91a408543b7951d566fe8a07a687fb17.nii.gz/MD5E-s185820--91a408543b7951d566fe8a07a687fb17.nii.gz

CMU_b/sub-0050643/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050643_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

CMU_b/sub-0050643/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KJ/25/MD5E-s250448--78b2dbc6f83d27e8a9a1284ea15a4cef.nii.gz/MD5E-s250448--78b2dbc6f83d27e8a9a1284ea15a4cef.nii.gz

CMU_b/sub-0050643/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050643_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

CMU_b/sub-0050643/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jm/9f/MD5E-s278243--31469b8b50b493677f5cf9efd4e9f09c.nii.gz/MD5E-s278243--31469b8b50b493677f5cf9efd4e9f09c.nii.gz

CMU_b/sub-0050643/mri/Tian_Subcortex_S2_7T_sub-0050643_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

CMU_b/sub-0050643/mri/Tian_Subcortex_S2_7T_sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pg/9K/MD5E-s25112--8c31f1d5d3c0d4e894519cd8c988549c.nii.gz/MD5E-s25112--8c31f1d5d3c0d4e894519cd8c988549c.nii.gz

CMU_b/sub-0050643/mri/aal3_sub-0050643_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

CMU_b/sub-0050643/mri/aal3_sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jz/qF/MD5E-s189574--705605322391e5678d27464c470e2ecf.nii.gz/MD5E-s189574--705605322391e5678d27464c470e2ecf.nii.gz

CMU_b/sub-0050643/mri/anatomy3_sub-0050643_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

CMU_b/sub-0050643/mri/anatomy3_sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2W/Jx/MD5E-s137839--694c33eae7c665e7c9be8478b4a5768f.nii.gz/MD5E-s137839--694c33eae7c665e7c9be8478b4a5768f.nii.gz

CMU_b/sub-0050643/mri/anon_misub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ww/7Q/MD5E-s8200363--62db7215accda31ab8986d25cffdeba1.nii.gz/MD5E-s8200363--62db7215accda31ab8986d25cffdeba1.nii.gz

CMU_b/sub-0050643/mri/anon_msub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jg/xP/MD5E-s7759488--0094f2db63a6360958a9bef18baa10eb.nii.gz/MD5E-s7759488--0094f2db63a6360958a9bef18baa10eb.nii.gz

CMU_b/sub-0050643/mri/cat_sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/96/3j/MD5E-s101602--de4e985e016c9959a62361b8349839f3.nii.gz/MD5E-s101602--de4e985e016c9959a62361b8349839f3.nii.gz

CMU_b/sub-0050643/mri/cobra_sub-0050643_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

CMU_b/sub-0050643/mri/cobra_sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z0/VM/MD5E-s51015--0a4207a29d5aeeb838ea0b821fd48ff1.nii.gz/MD5E-s51015--0a4207a29d5aeeb838ea0b821fd48ff1.nii.gz

CMU_b/sub-0050643/mri/hammers_sub-0050643_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

CMU_b/sub-0050643/mri/hammers_sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jx/7g/MD5E-s150799--1c94a641a5b1a3e766dc7b745a0342b4.nii.gz/MD5E-s150799--1c94a641a5b1a3e766dc7b745a0342b4.nii.gz

CMU_b/sub-0050643/mri/ibsr_sub-0050643_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

CMU_b/sub-0050643/mri/ibsr_sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fw/8G/MD5E-s158398--b389d38593917299ba0618ff93ebc18a.nii.gz/MD5E-s158398--b389d38593917299ba0618ff93ebc18a.nii.gz

CMU_b/sub-0050643/mri/it_sub-0050643_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/7v/V1/MD5E-s283--1a9e52dedd36a175531f5fc144c39d88.mat/MD5E-s283--1a9e52dedd36a175531f5fc144c39d88.mat

CMU_b/sub-0050643/mri/it_sub-0050643_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vz/MG/MD5E-s283--e7c75d81a9dc6d9b5ce48bf17c9598db.mat/MD5E-s283--e7c75d81a9dc6d9b5ce48bf17c9598db.mat

CMU_b/sub-0050643/mri/iy_sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wx/KG/MD5E-s46249763--fa4d9f0a11d87210b1591a4a0ff0a243.nii.gz/MD5E-s46249763--fa4d9f0a11d87210b1591a4a0ff0a243.nii.gz

CMU_b/sub-0050643/mri/julichbrain_sub-0050643_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

CMU_b/sub-0050643/mri/julichbrain_sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pv/PP/MD5E-s200264--9ddcf01d9578a314b1e0437a149775d4.nii.gz/MD5E-s200264--9ddcf01d9578a314b1e0437a149775d4.nii.gz

CMU_b/sub-0050643/mri/lpba40_sub-0050643_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

CMU_b/sub-0050643/mri/lpba40_sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZM/z6/MD5E-s146087--03e147e6c3d10fe15ecc014effa73eee.nii.gz/MD5E-s146087--03e147e6c3d10fe15ecc014effa73eee.nii.gz

CMU_b/sub-0050643/mri/m0wp1sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/68/17/MD5E-s2574434--9a16cb5c6ab6152bf0fa357903522c0e.nii.gz/MD5E-s2574434--9a16cb5c6ab6152bf0fa357903522c0e.nii.gz

CMU_b/sub-0050643/mri/m0wp2sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zj/W4/MD5E-s2305182--f6b2643991befc93a262abed7f6b9c99.nii.gz/MD5E-s2305182--f6b2643991befc93a262abed7f6b9c99.nii.gz

CMU_b/sub-0050643/mri/m0wp3sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p3/jJ/MD5E-s2530672--d4970768cffce0c9036df460dc224071.nii.gz/MD5E-s2530672--d4970768cffce0c9036df460dc224071.nii.gz

CMU_b/sub-0050643/mri/mori_sub-0050643_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

CMU_b/sub-0050643/mri/mori_sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zF/G0/MD5E-s176432--6d10433098fd7ea49d089c482ab56b48.nii.gz/MD5E-s176432--6d10433098fd7ea49d089c482ab56b48.nii.gz

CMU_b/sub-0050643/mri/mwp1sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qF/v2/MD5E-s2578522--bd8bbd599cbe090c676a13979796df8e.nii.gz/MD5E-s2578522--bd8bbd599cbe090c676a13979796df8e.nii.gz

CMU_b/sub-0050643/mri/mwp2sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/36/29/MD5E-s2300780--1c08574e4a21ff64355b3141c5d39c53.nii.gz/MD5E-s2300780--1c08574e4a21ff64355b3141c5d39c53.nii.gz

CMU_b/sub-0050643/mri/mwp3sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6v/qj/MD5E-s2526816--7b61f81ccf46ce5620ec2c1d0e82057d.nii.gz/MD5E-s2526816--7b61f81ccf46ce5620ec2c1d0e82057d.nii.gz

CMU_b/sub-0050643/mri/neuromorphometrics_sub-0050643_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

CMU_b/sub-0050643/mri/neuromorphometrics_sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GG/7F/MD5E-s202866--2ee59680ec75857ab14490acdb8f11e7.nii.gz/MD5E-s202866--2ee59680ec75857ab14490acdb8f11e7.nii.gz

CMU_b/sub-0050643/mri/p0sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xx/mQ/MD5E-s644956--ad06c8f472dc25a4b0eb8b50a47e62c7.nii.gz/MD5E-s644956--ad06c8f472dc25a4b0eb8b50a47e62c7.nii.gz

CMU_b/sub-0050643/mri/p1sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P3/gv/MD5E-s680724--2e7babfd3b00c079d1f4d6a822963a9b.nii.gz/MD5E-s680724--2e7babfd3b00c079d1f4d6a822963a9b.nii.gz

CMU_b/sub-0050643/mri/p2sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GK/x4/MD5E-s458822--3b9f69f80a7a12125a85540189eb00dd.nii.gz/MD5E-s458822--3b9f69f80a7a12125a85540189eb00dd.nii.gz

CMU_b/sub-0050643/mri/p3sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7j/mW/MD5E-s385240--07c210816649841b9853ddfa1e992ca7.nii.gz/MD5E-s385240--07c210816649841b9853ddfa1e992ca7.nii.gz

CMU_b/sub-0050643/mri/rp1sub-0050643_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8F/wV/MD5E-s445470--71f99b332f7f43c2a09929b5249a68f5.nii.gz/MD5E-s445470--71f99b332f7f43c2a09929b5249a68f5.nii.gz

CMU_b/sub-0050643/mri/rp2sub-0050643_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X6/JV/MD5E-s311147--4986254a8394dcfb06497260da92d93d.nii.gz/MD5E-s311147--4986254a8394dcfb06497260da92d93d.nii.gz

CMU_b/sub-0050643/mri/rp3sub-0050643_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QK/Pz/MD5E-s283508--f2d78e68c74ab7b68e465f3e67513204.nii.gz/MD5E-s283508--f2d78e68c74ab7b68e465f3e67513204.nii.gz

CMU_b/sub-0050643/mri/t_sub-0050643_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/0g/kJ/MD5E-s282--77bed98dd1b162f2b01dcf8c8fb53cca.mat/MD5E-s282--77bed98dd1b162f2b01dcf8c8fb53cca.mat

CMU_b/sub-0050643/mri/t_sub-0050643_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vP/k0/MD5E-s284--c67d6bbee3e540f8f56e9b1ccb1136fa.mat/MD5E-s284--c67d6bbee3e540f8f56e9b1ccb1136fa.mat

CMU_b/sub-0050643/mri/thalamus_sub-0050643_T1w.csv

@@ -0,0 +1 @@
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CMU_b/sub-0050643/mri/thalamus_sub-0050643_T1w.nii.gz

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CMU_b/sub-0050643/mri/wj_sub-0050643_T1w.nii.gz

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CMU_b/sub-0050643/mri/wmisub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050643/mri/wmsub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050643/mri/wp0sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050643/mri/wp1sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050643/mri/wp2sub-0050643_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050643/mri/wp3sub-0050643_T1w.nii.gz

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