[DATALAD RUNCMD] Compute UM_1/sub-0050317

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050317/anat/sub-0050317_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050317"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050317/label/catROI_sub-0050317_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/9K/W7/MD5E-s61531--c830b0375845bb40b43de7bd68c7da6b.mat/MD5E-s61531--c830b0375845bb40b43de7bd68c7da6b.mat

UM_1/sub-0050317/label/catROI_sub-0050317_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/8F/PJ/MD5E-s188813--6992345c51757f017d219b99bc3057b4.xml/MD5E-s188813--6992345c51757f017d219b99bc3057b4.xml

UM_1/sub-0050317/label/catROIs_sub-0050317_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/gP/0G/MD5E-s120407--328b233ed1160925b973c44d30978638.mat/MD5E-s120407--328b233ed1160925b973c44d30978638.mat

UM_1/sub-0050317/label/catROIs_sub-0050317_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/1k/Mx/MD5E-s332194--0294070a14bc72b167ddd285347744aa.xml/MD5E-s332194--0294070a14bc72b167ddd285347744aa.xml

UM_1/sub-0050317/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050317_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050317/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050317_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8z/xJ/MD5E-s149785--a75d1eb2b48ee1a4503a8c616764a74b.nii.gz/MD5E-s149785--a75d1eb2b48ee1a4503a8c616764a74b.nii.gz

UM_1/sub-0050317/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050317_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050317/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050317_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wM/Gv/MD5E-s167760--91b3b4fbea62578dfe4d42868ed28aae.nii.gz/MD5E-s167760--91b3b4fbea62578dfe4d42868ed28aae.nii.gz

UM_1/sub-0050317/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050317_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050317/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050317_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J0/Pk/MD5E-s211295--3b3299d6316f674fbd56bb3049868dcc.nii.gz/MD5E-s211295--3b3299d6316f674fbd56bb3049868dcc.nii.gz

UM_1/sub-0050317/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050317_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050317/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050317_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vK/9P/MD5E-s235687--c9f11bbbb83d116492b5b934e46ede87.nii.gz/MD5E-s235687--c9f11bbbb83d116492b5b934e46ede87.nii.gz

UM_1/sub-0050317/mri/Tian_Subcortex_S2_7T_sub-0050317_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050317/mri/Tian_Subcortex_S2_7T_sub-0050317_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7j/M8/MD5E-s19121--b6a934bc99726c2717352d1f3ae763cf.nii.gz/MD5E-s19121--b6a934bc99726c2717352d1f3ae763cf.nii.gz

UM_1/sub-0050317/mri/aal3_sub-0050317_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

UM_1/sub-0050317/mri/aal3_sub-0050317_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050317/mri/anatomy3_sub-0050317_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050317/mri/anatomy3_sub-0050317_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050317/mri/anon_misub-0050317_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5p/Zg/MD5E-s4029564--7afebe60e106f742fd003685a88045a3.nii.gz/MD5E-s4029564--7afebe60e106f742fd003685a88045a3.nii.gz

UM_1/sub-0050317/mri/anon_msub-0050317_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fx/gp/MD5E-s7398855--71c4d1949f5ef3216eae473d0e9b97ae.nii.gz/MD5E-s7398855--71c4d1949f5ef3216eae473d0e9b97ae.nii.gz

UM_1/sub-0050317/mri/cat_sub-0050317_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X4/gG/MD5E-s86219--09c01cf75710138305b0a2dbb41de761.nii.gz/MD5E-s86219--09c01cf75710138305b0a2dbb41de761.nii.gz

UM_1/sub-0050317/mri/cobra_sub-0050317_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050317/mri/cobra_sub-0050317_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050317/mri/hammers_sub-0050317_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050317/mri/hammers_sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/ibsr_sub-0050317_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050317/mri/ibsr_sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/it_sub-0050317_T1w_affine_reorient.mat

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+../../../.git/annex/objects/83/2P/MD5E-s283--e548c1ed81f4c18976dcd59c845c7181.mat/MD5E-s283--e548c1ed81f4c18976dcd59c845c7181.mat

UM_1/sub-0050317/mri/it_sub-0050317_T1w_rigid_reorient.mat

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UM_1/sub-0050317/mri/iy_sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/julichbrain_sub-0050317_T1w.csv

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UM_1/sub-0050317/mri/julichbrain_sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/lpba40_sub-0050317_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050317/mri/lpba40_sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/m0wp1sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/m0wp2sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/m0wp3sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/mori_sub-0050317_T1w.csv

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UM_1/sub-0050317/mri/mori_sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/mwp1sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/mwp2sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/mwp3sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/neuromorphometrics_sub-0050317_T1w.csv

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UM_1/sub-0050317/mri/neuromorphometrics_sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/p0sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/p1sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/p2sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/p3sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/rp1sub-0050317_T1w_affine.nii.gz

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UM_1/sub-0050317/mri/rp2sub-0050317_T1w_affine.nii.gz

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UM_1/sub-0050317/mri/rp3sub-0050317_T1w_affine.nii.gz

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UM_1/sub-0050317/mri/t_sub-0050317_T1w_affine_reorient.mat

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UM_1/sub-0050317/mri/t_sub-0050317_T1w_rigid_reorient.mat

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UM_1/sub-0050317/mri/thalamus_sub-0050317_T1w.csv

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UM_1/sub-0050317/mri/thalamus_sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/wj_sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/wmisub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/wmsub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/wp0sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/wp1sub-0050317_T1w.nii.gz

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UM_1/sub-0050317/mri/wp2sub-0050317_T1w.nii.gz

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