[DATALAD RUNCMD] Compute UM_1/sub-0050335

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050335/anat/sub-0050335_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050335"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050335/label/catROI_sub-0050335_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/WW/vj/MD5E-s61419--e94f972c28553ebd617da453c3e468ff.mat/MD5E-s61419--e94f972c28553ebd617da453c3e468ff.mat

UM_1/sub-0050335/label/catROI_sub-0050335_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/66/9F/MD5E-s188864--8033dc4735288162ad938bb9b0bc9658.xml/MD5E-s188864--8033dc4735288162ad938bb9b0bc9658.xml

UM_1/sub-0050335/label/catROIs_sub-0050335_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vk/kQ/MD5E-s120101--f9832fccf0f21c8727162aeb6c27f2fb.mat/MD5E-s120101--f9832fccf0f21c8727162aeb6c27f2fb.mat

UM_1/sub-0050335/label/catROIs_sub-0050335_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/1f/Jj/MD5E-s332157--e142ea7d8ded57aed1d5549f58fd83b7.xml/MD5E-s332157--e142ea7d8ded57aed1d5549f58fd83b7.xml

UM_1/sub-0050335/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050335/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P6/MW/MD5E-s138793--85e70ee831c131d9a19b97752298b08e.nii.gz/MD5E-s138793--85e70ee831c131d9a19b97752298b08e.nii.gz

UM_1/sub-0050335/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050335/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xM/X7/MD5E-s155586--c7161baa0b2c04e1aec8d679969f8427.nii.gz/MD5E-s155586--c7161baa0b2c04e1aec8d679969f8427.nii.gz

UM_1/sub-0050335/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050335/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4X/4V/MD5E-s195200--97ef91c067c5cb50da86a2addb6b1d0d.nii.gz/MD5E-s195200--97ef91c067c5cb50da86a2addb6b1d0d.nii.gz

UM_1/sub-0050335/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050335/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jm/46/MD5E-s217513--cebc7839c6bdb58a2279b5c497fa964a.nii.gz/MD5E-s217513--cebc7839c6bdb58a2279b5c497fa964a.nii.gz

UM_1/sub-0050335/mri/Tian_Subcortex_S2_7T_sub-0050335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050335/mri/Tian_Subcortex_S2_7T_sub-0050335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8F/07/MD5E-s17370--1cbe685c5f0b6851994466e99510cc60.nii.gz/MD5E-s17370--1cbe685c5f0b6851994466e99510cc60.nii.gz

UM_1/sub-0050335/mri/aal3_sub-0050335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

UM_1/sub-0050335/mri/aal3_sub-0050335_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050335/mri/anatomy3_sub-0050335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UM_1/sub-0050335/mri/anatomy3_sub-0050335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qP/0v/MD5E-s111537--77b84dad1811a40c2f0ae9e6b553f680.nii.gz/MD5E-s111537--77b84dad1811a40c2f0ae9e6b553f680.nii.gz

UM_1/sub-0050335/mri/anon_misub-0050335_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050335/mri/anon_msub-0050335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZM/58/MD5E-s4752185--3dde3186f6e7497761a0c2b98ad7208d.nii.gz/MD5E-s4752185--3dde3186f6e7497761a0c2b98ad7208d.nii.gz

UM_1/sub-0050335/mri/cat_sub-0050335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/v1/J8/MD5E-s82707--948a0d9e7dac7e96c45e9bb458de3e29.nii.gz/MD5E-s82707--948a0d9e7dac7e96c45e9bb458de3e29.nii.gz

UM_1/sub-0050335/mri/cobra_sub-0050335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050335/mri/cobra_sub-0050335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3J/F9/MD5E-s37543--dbbe2c2320de17a4d4390ab31bddb69a.nii.gz/MD5E-s37543--dbbe2c2320de17a4d4390ab31bddb69a.nii.gz

UM_1/sub-0050335/mri/hammers_sub-0050335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050335/mri/hammers_sub-0050335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6P/mF/MD5E-s121345--af7a9ead18a86c60f4064bc02001f7de.nii.gz/MD5E-s121345--af7a9ead18a86c60f4064bc02001f7de.nii.gz

UM_1/sub-0050335/mri/ibsr_sub-0050335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

UM_1/sub-0050335/mri/ibsr_sub-0050335_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wz/vm/MD5E-s125974--e5aadae56340a52d88b3482fbc3dcbce.nii.gz/MD5E-s125974--e5aadae56340a52d88b3482fbc3dcbce.nii.gz

UM_1/sub-0050335/mri/it_sub-0050335_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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UM_1/sub-0050335/mri/it_sub-0050335_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/1X/71/MD5E-s284--21fdb0f363fd855d1c53cb86b053781d.mat/MD5E-s284--21fdb0f363fd855d1c53cb86b053781d.mat

UM_1/sub-0050335/mri/iy_sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/julichbrain_sub-0050335_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_1/sub-0050335/mri/julichbrain_sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/lpba40_sub-0050335_T1w.csv

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+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UM_1/sub-0050335/mri/lpba40_sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/m0wp1sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/m0wp2sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/m0wp3sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/mori_sub-0050335_T1w.csv

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UM_1/sub-0050335/mri/mori_sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/mwp1sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/mwp2sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/mwp3sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/neuromorphometrics_sub-0050335_T1w.csv

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UM_1/sub-0050335/mri/neuromorphometrics_sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/p0sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/p1sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/p2sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/p3sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/rp1sub-0050335_T1w_affine.nii.gz

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UM_1/sub-0050335/mri/rp2sub-0050335_T1w_affine.nii.gz

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UM_1/sub-0050335/mri/rp3sub-0050335_T1w_affine.nii.gz

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UM_1/sub-0050335/mri/t_sub-0050335_T1w_affine_reorient.mat

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UM_1/sub-0050335/mri/t_sub-0050335_T1w_rigid_reorient.mat

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UM_1/sub-0050335/mri/thalamus_sub-0050335_T1w.csv

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UM_1/sub-0050335/mri/thalamus_sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/wj_sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/wmisub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/wmsub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/wp0sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/wp1sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/wp2sub-0050335_T1w.nii.gz

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UM_1/sub-0050335/mri/wp3sub-0050335_T1w.nii.gz

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