[DATALAD RUNCMD] Compute USM/sub-0050530

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050530/anat/sub-0050530_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050530"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050530/label/catROI_sub-0050530_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/q3/7p/MD5E-s61420--43752096ff36a35badc9ec512350c2c2.mat/MD5E-s61420--43752096ff36a35badc9ec512350c2c2.mat

USM/sub-0050530/label/catROI_sub-0050530_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/FQ/x1/MD5E-s189038--3a6bee11b73021dcd739d9c71c4c9fde.xml/MD5E-s189038--3a6bee11b73021dcd739d9c71c4c9fde.xml

USM/sub-0050530/label/catROIs_sub-0050530_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xz/vg/MD5E-s119994--dc12a9a3236b13c9c7434bca748e5827.mat/MD5E-s119994--dc12a9a3236b13c9c7434bca748e5827.mat

USM/sub-0050530/label/catROIs_sub-0050530_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/vP/1q/MD5E-s332058--50548e7263102d9af0d75448fe5089e0.xml/MD5E-s332058--50548e7263102d9af0d75448fe5089e0.xml

USM/sub-0050530/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050530_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050530/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q8/3X/MD5E-s393250--255f85e82869ad95fabed92694e758be.nii.gz/MD5E-s393250--255f85e82869ad95fabed92694e758be.nii.gz

USM/sub-0050530/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050530_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050530/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gx/X5/MD5E-s438859--7cff456dce69c0ce03baa9d107a623d9.nii.gz/MD5E-s438859--7cff456dce69c0ce03baa9d107a623d9.nii.gz

USM/sub-0050530/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050530_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050530/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z6/9W/MD5E-s631480--8117ecd69aad4954c3988ec931ee3ce2.nii.gz/MD5E-s631480--8117ecd69aad4954c3988ec931ee3ce2.nii.gz

USM/sub-0050530/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050530_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050530/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q2/1j/MD5E-s693678--b73a937ca431bc7bd05eb9e441144a6c.nii.gz/MD5E-s693678--b73a937ca431bc7bd05eb9e441144a6c.nii.gz

USM/sub-0050530/mri/Tian_Subcortex_S2_7T_sub-0050530_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050530/mri/Tian_Subcortex_S2_7T_sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4J/MV/MD5E-s67223--9982384e890c3cf2710d778b84a7c2f3.nii.gz/MD5E-s67223--9982384e890c3cf2710d778b84a7c2f3.nii.gz

USM/sub-0050530/mri/aal3_sub-0050530_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050530/mri/aal3_sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7v/ZK/MD5E-s442697--072bc9d1e024e98d1ec938375a36ac47.nii.gz/MD5E-s442697--072bc9d1e024e98d1ec938375a36ac47.nii.gz

USM/sub-0050530/mri/anatomy3_sub-0050530_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050530/mri/anatomy3_sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZM/4p/MD5E-s328520--144af6d01ac0ce79ae1e07a5d19cacb2.nii.gz/MD5E-s328520--144af6d01ac0ce79ae1e07a5d19cacb2.nii.gz

USM/sub-0050530/mri/anon_misub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/23/pj/MD5E-s17932302--c9d7ef637ef0c950d61cf0b35039edab.nii.gz/MD5E-s17932302--c9d7ef637ef0c950d61cf0b35039edab.nii.gz

USM/sub-0050530/mri/anon_msub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GV/pv/MD5E-s32076459--84750fdd0a040ab198530fd2915e8415.nii.gz/MD5E-s32076459--84750fdd0a040ab198530fd2915e8415.nii.gz

USM/sub-0050530/mri/cat_sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VJ/jz/MD5E-s247033--be21b14e11f3ff04b7be1f2717e02c85.nii.gz/MD5E-s247033--be21b14e11f3ff04b7be1f2717e02c85.nii.gz

USM/sub-0050530/mri/cobra_sub-0050530_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050530/mri/cobra_sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6M/Qf/MD5E-s130042--51d373adde46e8b8ce42253ca6592be8.nii.gz/MD5E-s130042--51d373adde46e8b8ce42253ca6592be8.nii.gz

USM/sub-0050530/mri/hammers_sub-0050530_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050530/mri/hammers_sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4X/49/MD5E-s353363--a1eb9c6708af9feb398be3b645a31e25.nii.gz/MD5E-s353363--a1eb9c6708af9feb398be3b645a31e25.nii.gz

USM/sub-0050530/mri/ibsr_sub-0050530_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050530/mri/ibsr_sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8x/Fp/MD5E-s379118--0745430bd00969ab4b09eafe2cac68b4.nii.gz/MD5E-s379118--0745430bd00969ab4b09eafe2cac68b4.nii.gz

USM/sub-0050530/mri/it_sub-0050530_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZP/1J/MD5E-s282--d86c86ac66d1d25d84287e17d6ca9ce2.mat/MD5E-s282--d86c86ac66d1d25d84287e17d6ca9ce2.mat

USM/sub-0050530/mri/it_sub-0050530_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/ff/9z/MD5E-s283--7f83dd061e9b2b1cde5a5df6715df5d4.mat/MD5E-s283--7f83dd061e9b2b1cde5a5df6715df5d4.mat

USM/sub-0050530/mri/iy_sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k8/72/MD5E-s162293994--db65b6ae2193903c010e9adbcc008ef3.nii.gz/MD5E-s162293994--db65b6ae2193903c010e9adbcc008ef3.nii.gz

USM/sub-0050530/mri/julichbrain_sub-0050530_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050530/mri/julichbrain_sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mZ/Gk/MD5E-s465343--a86cbee807334474cfb395712e59e221.nii.gz/MD5E-s465343--a86cbee807334474cfb395712e59e221.nii.gz

USM/sub-0050530/mri/lpba40_sub-0050530_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050530/mri/lpba40_sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050530/mri/m0wp1sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wk/3f/MD5E-s2551983--fdf21251a20c04f022824dfa06616d6a.nii.gz/MD5E-s2551983--fdf21251a20c04f022824dfa06616d6a.nii.gz

USM/sub-0050530/mri/m0wp2sub-0050530_T1w.nii.gz

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USM/sub-0050530/mri/m0wp3sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gP/Gm/MD5E-s2498392--36ddff27f538731af70c07ec28b2084b.nii.gz/MD5E-s2498392--36ddff27f538731af70c07ec28b2084b.nii.gz

USM/sub-0050530/mri/mori_sub-0050530_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050530/mri/mori_sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050530/mri/mwp1sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050530/mri/mwp2sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050530/mri/mwp3sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050530/mri/neuromorphometrics_sub-0050530_T1w.csv

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USM/sub-0050530/mri/neuromorphometrics_sub-0050530_T1w.nii.gz

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USM/sub-0050530/mri/p0sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050530/mri/p1sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050530/mri/p2sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050530/mri/p3sub-0050530_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050530/mri/rp1sub-0050530_T1w_affine.nii.gz

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USM/sub-0050530/mri/rp2sub-0050530_T1w_affine.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050530/mri/rp3sub-0050530_T1w_affine.nii.gz

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USM/sub-0050530/mri/t_sub-0050530_T1w_affine_reorient.mat

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+../../../.git/annex/objects/gG/2Z/MD5E-s284--9d0fad7c9b0b6bae6afdecb868ca40c6.mat/MD5E-s284--9d0fad7c9b0b6bae6afdecb868ca40c6.mat

USM/sub-0050530/mri/t_sub-0050530_T1w_rigid_reorient.mat

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USM/sub-0050530/mri/thalamus_sub-0050530_T1w.csv

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USM/sub-0050530/mri/thalamus_sub-0050530_T1w.nii.gz

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USM/sub-0050530/mri/wj_sub-0050530_T1w.nii.gz

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USM/sub-0050530/mri/wmisub-0050530_T1w.nii.gz

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USM/sub-0050530/mri/wmsub-0050530_T1w.nii.gz

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USM/sub-0050530/mri/wp0sub-0050530_T1w.nii.gz

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USM/sub-0050530/mri/wp1sub-0050530_T1w.nii.gz

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USM/sub-0050530/mri/wp2sub-0050530_T1w.nii.gz

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