[DATALAD RUNCMD] Compute UM_1/sub-0050285

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050285/anat/sub-0050285_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050285"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050285/label/catROI_sub-0050285_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/z4/1G/MD5E-s57953--e586ded400f285be881b7aab76bb1443.mat/MD5E-s57953--e586ded400f285be881b7aab76bb1443.mat

UM_1/sub-0050285/label/catROI_sub-0050285_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xk/6q/MD5E-s188954--00306a7aa2ef1479e206c0a3a4fdd986.xml/MD5E-s188954--00306a7aa2ef1479e206c0a3a4fdd986.xml

UM_1/sub-0050285/label/catROIs_sub-0050285_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/09/3Q/MD5E-s120084--849e7cfcee47f1a73f766e4946ce574c.mat/MD5E-s120084--849e7cfcee47f1a73f766e4946ce574c.mat

UM_1/sub-0050285/label/catROIs_sub-0050285_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/j5/4w/MD5E-s332142--4d5d48b8913c301e3cf376e32789b0d7.xml/MD5E-s332142--4d5d48b8913c301e3cf376e32789b0d7.xml

UM_1/sub-0050285/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050285_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050285/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050285_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4V/2v/MD5E-s137465--f6748224e5e58be17e248fce0b3e10a0.nii.gz/MD5E-s137465--f6748224e5e58be17e248fce0b3e10a0.nii.gz

UM_1/sub-0050285/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050285_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050285/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050285_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mm/Qg/MD5E-s154005--8f57636d546ba95663958fabdcf107df.nii.gz/MD5E-s154005--8f57636d546ba95663958fabdcf107df.nii.gz

UM_1/sub-0050285/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050285_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050285/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050285_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M0/12/MD5E-s194114--39d4abb1713d7e0826f1941babb00d68.nii.gz/MD5E-s194114--39d4abb1713d7e0826f1941babb00d68.nii.gz

UM_1/sub-0050285/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050285_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050285/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050285_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j5/V0/MD5E-s216487--cdeb8e85d597914f5c69164b3260b25f.nii.gz/MD5E-s216487--cdeb8e85d597914f5c69164b3260b25f.nii.gz

UM_1/sub-0050285/mri/Tian_Subcortex_S2_7T_sub-0050285_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050285/mri/Tian_Subcortex_S2_7T_sub-0050285_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zk/Kg/MD5E-s17174--0e175e197d0286a870f3f7fad5445fcb.nii.gz/MD5E-s17174--0e175e197d0286a870f3f7fad5445fcb.nii.gz

UM_1/sub-0050285/mri/aal3_sub-0050285_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050285/mri/aal3_sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/anatomy3_sub-0050285_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050285/mri/anatomy3_sub-0050285_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zq/4P/MD5E-s111297--aa8f096188f25dca59298a48668cfab1.nii.gz/MD5E-s111297--aa8f096188f25dca59298a48668cfab1.nii.gz

UM_1/sub-0050285/mri/anon_misub-0050285_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050285/mri/anon_msub-0050285_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1X/jg/MD5E-s4848049--9b283ec075a0ee951ad664b158c97a71.nii.gz/MD5E-s4848049--9b283ec075a0ee951ad664b158c97a71.nii.gz

UM_1/sub-0050285/mri/cat_sub-0050285_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qm/Q2/MD5E-s80238--730fd6524fd9b3ddfba8898d3e556761.nii.gz/MD5E-s80238--730fd6524fd9b3ddfba8898d3e556761.nii.gz

UM_1/sub-0050285/mri/cobra_sub-0050285_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050285/mri/cobra_sub-0050285_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7J/xv/MD5E-s35956--8684c8c12e42295228eed7d97b923ae1.nii.gz/MD5E-s35956--8684c8c12e42295228eed7d97b923ae1.nii.gz

UM_1/sub-0050285/mri/hammers_sub-0050285_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050285/mri/hammers_sub-0050285_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V7/KJ/MD5E-s121047--b10e59b3016d0b28316d5e28682b2c10.nii.gz/MD5E-s121047--b10e59b3016d0b28316d5e28682b2c10.nii.gz

UM_1/sub-0050285/mri/ibsr_sub-0050285_T1w.csv

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UM_1/sub-0050285/mri/ibsr_sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/it_sub-0050285_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/01/7J/MD5E-s283--3e65bbe8585c54e45b6468f5fc0f70e5.mat/MD5E-s283--3e65bbe8585c54e45b6468f5fc0f70e5.mat

UM_1/sub-0050285/mri/it_sub-0050285_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/VF/K6/MD5E-s282--b0a253e4670b223c34ca8d1dcec2a20a.mat/MD5E-s282--b0a253e4670b223c34ca8d1dcec2a20a.mat

UM_1/sub-0050285/mri/iy_sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/julichbrain_sub-0050285_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_1/sub-0050285/mri/julichbrain_sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/lpba40_sub-0050285_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050285/mri/lpba40_sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/m0wp1sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/m0wp2sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/m0wp3sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/mori_sub-0050285_T1w.csv

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UM_1/sub-0050285/mri/mori_sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/mwp1sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/mwp2sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/mwp3sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/neuromorphometrics_sub-0050285_T1w.csv

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UM_1/sub-0050285/mri/neuromorphometrics_sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/p0sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/p1sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/p2sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/p3sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/rp1sub-0050285_T1w_affine.nii.gz

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UM_1/sub-0050285/mri/rp2sub-0050285_T1w_affine.nii.gz

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UM_1/sub-0050285/mri/rp3sub-0050285_T1w_affine.nii.gz

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UM_1/sub-0050285/mri/t_sub-0050285_T1w_affine_reorient.mat

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UM_1/sub-0050285/mri/t_sub-0050285_T1w_rigid_reorient.mat

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UM_1/sub-0050285/mri/thalamus_sub-0050285_T1w.csv

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UM_1/sub-0050285/mri/thalamus_sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/wj_sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/wmisub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/wmsub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/wp0sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/wp1sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/wp2sub-0050285_T1w.nii.gz

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UM_1/sub-0050285/mri/wp3sub-0050285_T1w.nii.gz

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