[DATALAD RUNCMD] Compute MaxMun_a/sub-0051606

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/MaxMun_a/sub-0051606/anat/sub-0051606_T1w.nii.gz"
 ],
 "outputs": [
  "MaxMun_a/sub-0051606"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MaxMun_a/sub-0051606/label/catROI_sub-0051606_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/k4/vp/MD5E-s57921--fa7cd4df0bcb5462d3f74ded18e48872.mat/MD5E-s57921--fa7cd4df0bcb5462d3f74ded18e48872.mat

MaxMun_a/sub-0051606/label/catROI_sub-0051606_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/pZ/kK/MD5E-s188777--4e23a2a868f5423e6daee4991e20bde8.xml/MD5E-s188777--4e23a2a868f5423e6daee4991e20bde8.xml

MaxMun_a/sub-0051606/label/catROIs_sub-0051606_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/9k/G9/MD5E-s120137--f355b89a449bb2dbff763ae47002c453.mat/MD5E-s120137--f355b89a449bb2dbff763ae47002c453.mat

MaxMun_a/sub-0051606/label/catROIs_sub-0051606_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/qz/J9/MD5E-s332148--532dd66d129d49bfcbe7200ffec10e4d.xml/MD5E-s332148--532dd66d129d49bfcbe7200ffec10e4d.xml

MaxMun_a/sub-0051606/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MaxMun_a/sub-0051606/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/97/80/MD5E-s168235--4ff97f5302114dca681af4022fe3d1c1.nii.gz/MD5E-s168235--4ff97f5302114dca681af4022fe3d1c1.nii.gz

MaxMun_a/sub-0051606/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MaxMun_a/sub-0051606/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vk/PX/MD5E-s187715--06e0f30e21c7e5e4aa73a4f4f6632706.nii.gz/MD5E-s187715--06e0f30e21c7e5e4aa73a4f4f6632706.nii.gz

MaxMun_a/sub-0051606/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MaxMun_a/sub-0051606/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5V/VP/MD5E-s254390--94931401fc68e408d5c2c2f0bbabfeb4.nii.gz/MD5E-s254390--94931401fc68e408d5c2c2f0bbabfeb4.nii.gz

MaxMun_a/sub-0051606/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MaxMun_a/sub-0051606/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/gm/MD5E-s281569--ec7a092b618b758cbb2415c48ccb88e5.nii.gz/MD5E-s281569--ec7a092b618b758cbb2415c48ccb88e5.nii.gz

MaxMun_a/sub-0051606/mri/Tian_Subcortex_S2_7T_sub-0051606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MaxMun_a/sub-0051606/mri/Tian_Subcortex_S2_7T_sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6p/JQ/MD5E-s24072--f79f64b69a81adaabc9a5ef676a404a8.nii.gz/MD5E-s24072--f79f64b69a81adaabc9a5ef676a404a8.nii.gz

MaxMun_a/sub-0051606/mri/aal3_sub-0051606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MaxMun_a/sub-0051606/mri/aal3_sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fw/4f/MD5E-s192756--f7603e562bd7350912d98d0c6799599a.nii.gz/MD5E-s192756--f7603e562bd7350912d98d0c6799599a.nii.gz

MaxMun_a/sub-0051606/mri/anatomy3_sub-0051606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MaxMun_a/sub-0051606/mri/anatomy3_sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z0/kZ/MD5E-s136923--781f3cc5cebf0aae43b4c9da044192e7.nii.gz/MD5E-s136923--781f3cc5cebf0aae43b4c9da044192e7.nii.gz

MaxMun_a/sub-0051606/mri/anon_misub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xp/WZ/MD5E-s4499131--a2ef9f8e20ec2af613ef1135c61319b1.nii.gz/MD5E-s4499131--a2ef9f8e20ec2af613ef1135c61319b1.nii.gz

MaxMun_a/sub-0051606/mri/anon_msub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5f/06/MD5E-s9131483--9f4aec89e6ce6a2cd8a23853704f8b24.nii.gz/MD5E-s9131483--9f4aec89e6ce6a2cd8a23853704f8b24.nii.gz

MaxMun_a/sub-0051606/mri/cat_sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6G/z8/MD5E-s101620--af63a740cc096cea0ee176dcc74133f2.nii.gz/MD5E-s101620--af63a740cc096cea0ee176dcc74133f2.nii.gz

MaxMun_a/sub-0051606/mri/cobra_sub-0051606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MaxMun_a/sub-0051606/mri/cobra_sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W2/38/MD5E-s45719--41c275e7e19274fa37b9abad774f9926.nii.gz/MD5E-s45719--41c275e7e19274fa37b9abad774f9926.nii.gz

MaxMun_a/sub-0051606/mri/hammers_sub-0051606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MaxMun_a/sub-0051606/mri/hammers_sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1Q/xz/MD5E-s148691--8f03af2ac4d64ca1b5b92573e62ab3b0.nii.gz/MD5E-s148691--8f03af2ac4d64ca1b5b92573e62ab3b0.nii.gz

MaxMun_a/sub-0051606/mri/ibsr_sub-0051606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MaxMun_a/sub-0051606/mri/ibsr_sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xG/gp/MD5E-s156774--6a8f6aa2e557b333ecc1d09fd7a24bcd.nii.gz/MD5E-s156774--6a8f6aa2e557b333ecc1d09fd7a24bcd.nii.gz

MaxMun_a/sub-0051606/mri/it_sub-0051606_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/z2/Fw/MD5E-s283--0bd205e3558b5ceb47c0f9bc8158f88a.mat/MD5E-s283--0bd205e3558b5ceb47c0f9bc8158f88a.mat

MaxMun_a/sub-0051606/mri/it_sub-0051606_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/43/Z2/MD5E-s283--2663c53b629cb2354aa4912b51e110b4.mat/MD5E-s283--2663c53b629cb2354aa4912b51e110b4.mat

MaxMun_a/sub-0051606/mri/iy_sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p9/9F/MD5E-s45712812--56ef464749658b97de2de1a03aeb5902.nii.gz/MD5E-s45712812--56ef464749658b97de2de1a03aeb5902.nii.gz

MaxMun_a/sub-0051606/mri/julichbrain_sub-0051606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MaxMun_a/sub-0051606/mri/julichbrain_sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K6/q9/MD5E-s202841--32287a95bbfbb87c9514095110c468ba.nii.gz/MD5E-s202841--32287a95bbfbb87c9514095110c468ba.nii.gz

MaxMun_a/sub-0051606/mri/lpba40_sub-0051606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

MaxMun_a/sub-0051606/mri/lpba40_sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z4/Zz/MD5E-s145277--c182567d1f28b4081fbde8eb152b2928.nii.gz/MD5E-s145277--c182567d1f28b4081fbde8eb152b2928.nii.gz

MaxMun_a/sub-0051606/mri/m0wp1sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k8/Fp/MD5E-s2590184--b80c4ea777702fb19741228f6c300928.nii.gz/MD5E-s2590184--b80c4ea777702fb19741228f6c300928.nii.gz

MaxMun_a/sub-0051606/mri/m0wp2sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V7/0K/MD5E-s2281994--bce2d1e3ce550b42bc95cb875aa5f76e.nii.gz/MD5E-s2281994--bce2d1e3ce550b42bc95cb875aa5f76e.nii.gz

MaxMun_a/sub-0051606/mri/m0wp3sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kK/6G/MD5E-s2557763--59fc4c4d7f6df9d93cef0d698771119a.nii.gz/MD5E-s2557763--59fc4c4d7f6df9d93cef0d698771119a.nii.gz

MaxMun_a/sub-0051606/mri/mori_sub-0051606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

MaxMun_a/sub-0051606/mri/mori_sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MM/Pg/MD5E-s178991--67a04da6d87404d53280723c1cfc4558.nii.gz/MD5E-s178991--67a04da6d87404d53280723c1cfc4558.nii.gz

MaxMun_a/sub-0051606/mri/mwp1sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6f/5m/MD5E-s2594696--099634bb9f6eda61b9305e47f3ce1f44.nii.gz/MD5E-s2594696--099634bb9f6eda61b9305e47f3ce1f44.nii.gz

MaxMun_a/sub-0051606/mri/mwp2sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8W/qw/MD5E-s2278915--a5895350bfa7bafc84fa7e303d0f2be7.nii.gz/MD5E-s2278915--a5895350bfa7bafc84fa7e303d0f2be7.nii.gz

MaxMun_a/sub-0051606/mri/mwp3sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zk/7f/MD5E-s2553949--5809268f9a7b71c7c6a13bb8eb7f1471.nii.gz/MD5E-s2553949--5809268f9a7b71c7c6a13bb8eb7f1471.nii.gz

MaxMun_a/sub-0051606/mri/neuromorphometrics_sub-0051606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

MaxMun_a/sub-0051606/mri/neuromorphometrics_sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qk/zq/MD5E-s201384--c69634489eec6834d5a471743067a194.nii.gz/MD5E-s201384--c69634489eec6834d5a471743067a194.nii.gz

MaxMun_a/sub-0051606/mri/p0sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qm/vq/MD5E-s639306--91212a67f5c0f21db0b16e36312630c5.nii.gz/MD5E-s639306--91212a67f5c0f21db0b16e36312630c5.nii.gz

MaxMun_a/sub-0051606/mri/p1sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4Q/FP/MD5E-s675020--92a5ed89c582861c1e7557d5de33038c.nii.gz/MD5E-s675020--92a5ed89c582861c1e7557d5de33038c.nii.gz

MaxMun_a/sub-0051606/mri/p2sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xw/Q6/MD5E-s433776--42032fc084556d6a3582e123ad9d6725.nii.gz/MD5E-s433776--42032fc084556d6a3582e123ad9d6725.nii.gz

MaxMun_a/sub-0051606/mri/p3sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5X/ZZ/MD5E-s400836--5a867d3019e95a196408beaa4bd76fc9.nii.gz/MD5E-s400836--5a867d3019e95a196408beaa4bd76fc9.nii.gz

MaxMun_a/sub-0051606/mri/rp1sub-0051606_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4Z/w3/MD5E-s441507--5e0aadede1d1ba1b0e54dbe4c4ffbda7.nii.gz/MD5E-s441507--5e0aadede1d1ba1b0e54dbe4c4ffbda7.nii.gz

MaxMun_a/sub-0051606/mri/rp2sub-0051606_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mg/mg/MD5E-s296697--b6de5a562e3f038f13fd32d3ea57f17c.nii.gz/MD5E-s296697--b6de5a562e3f038f13fd32d3ea57f17c.nii.gz

MaxMun_a/sub-0051606/mri/rp3sub-0051606_T1w_affine.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051606/mri/t_sub-0051606_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xW/V4/MD5E-s283--3d45617212c4cdeb8b19917790a1e676.mat/MD5E-s283--3d45617212c4cdeb8b19917790a1e676.mat

MaxMun_a/sub-0051606/mri/t_sub-0051606_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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MaxMun_a/sub-0051606/mri/thalamus_sub-0051606_T1w.csv

@@ -0,0 +1 @@
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MaxMun_a/sub-0051606/mri/thalamus_sub-0051606_T1w.nii.gz

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MaxMun_a/sub-0051606/mri/wj_sub-0051606_T1w.nii.gz

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MaxMun_a/sub-0051606/mri/wmisub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051606/mri/wmsub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051606/mri/wp0sub-0051606_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_a/sub-0051606/mri/wp1sub-0051606_T1w.nii.gz

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