[DATALAD RUNCMD] Compute Olin/sub-0050116

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Olin/sub-0050116/anat/sub-0050116_T1w.nii.gz"
 ],
 "outputs": [
  "Olin/sub-0050116"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Olin/sub-0050116/label/catROI_sub-0050116_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/zP/MD5E-s61342--00112f228dbec87b27cb918c945c380c.mat/MD5E-s61342--00112f228dbec87b27cb918c945c380c.mat

Olin/sub-0050116/label/catROI_sub-0050116_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/5g/Z3/MD5E-s188711--6e15b6703c40c757c083002a06b43ed8.xml/MD5E-s188711--6e15b6703c40c757c083002a06b43ed8.xml

Olin/sub-0050116/label/catROIs_sub-0050116_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/g0/W9/MD5E-s120241--4e765a07a7de5eb0aadc9d30e0f74ee7.mat/MD5E-s120241--4e765a07a7de5eb0aadc9d30e0f74ee7.mat

Olin/sub-0050116/label/catROIs_sub-0050116_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/gk/66/MD5E-s332084--092e13fa89aaef794f2ec67c33fed29f.xml/MD5E-s332084--092e13fa89aaef794f2ec67c33fed29f.xml

Olin/sub-0050116/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050116_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Olin/sub-0050116/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050116_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6F/mV/MD5E-s183558--ba5fc4c12220185794fa3759559addf4.nii.gz/MD5E-s183558--ba5fc4c12220185794fa3759559addf4.nii.gz

Olin/sub-0050116/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050116_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Olin/sub-0050116/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050116_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mw/X8/MD5E-s204457--3b0bfb9bda33504f396704f150791736.nii.gz/MD5E-s204457--3b0bfb9bda33504f396704f150791736.nii.gz

Olin/sub-0050116/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050116_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Olin/sub-0050116/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050116_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vX/x9/MD5E-s264333--fcc7ac445cbcf39e522db56903822929.nii.gz/MD5E-s264333--fcc7ac445cbcf39e522db56903822929.nii.gz

Olin/sub-0050116/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050116_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Olin/sub-0050116/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050116_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jx/vP/MD5E-s294927--7b8ddb5d2482dfa26f55e6f0c96ce40e.nii.gz/MD5E-s294927--7b8ddb5d2482dfa26f55e6f0c96ce40e.nii.gz

Olin/sub-0050116/mri/Tian_Subcortex_S2_7T_sub-0050116_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Olin/sub-0050116/mri/Tian_Subcortex_S2_7T_sub-0050116_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kz/PZ/MD5E-s24618--284828e42c7e965fa954da270ef4984b.nii.gz/MD5E-s24618--284828e42c7e965fa954da270ef4984b.nii.gz

Olin/sub-0050116/mri/aal3_sub-0050116_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Olin/sub-0050116/mri/aal3_sub-0050116_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050116/mri/anatomy3_sub-0050116_T1w.csv

@@ -0,0 +1 @@
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Olin/sub-0050116/mri/anatomy3_sub-0050116_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4K/v9/MD5E-s151153--a3db2a4018fda3c5a2de5a1b5b9e8170.nii.gz/MD5E-s151153--a3db2a4018fda3c5a2de5a1b5b9e8170.nii.gz

Olin/sub-0050116/mri/anon_misub-0050116_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WJ/46/MD5E-s5072860--4e5b61d5e480b8600be4f97868de1242.nii.gz/MD5E-s5072860--4e5b61d5e480b8600be4f97868de1242.nii.gz

Olin/sub-0050116/mri/anon_msub-0050116_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9K/wJ/MD5E-s10097687--6aceb153cd091c007795a161fb44d836.nii.gz/MD5E-s10097687--6aceb153cd091c007795a161fb44d836.nii.gz

Olin/sub-0050116/mri/cat_sub-0050116_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1X/xM/MD5E-s110391--140ca0499d8ff1269ad6604b5f63fc82.nii.gz/MD5E-s110391--140ca0499d8ff1269ad6604b5f63fc82.nii.gz

Olin/sub-0050116/mri/cobra_sub-0050116_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Olin/sub-0050116/mri/cobra_sub-0050116_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050116/mri/hammers_sub-0050116_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Olin/sub-0050116/mri/hammers_sub-0050116_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JJ/xg/MD5E-s157725--da913cfee896f24f8ecad40e93bfa260.nii.gz/MD5E-s157725--da913cfee896f24f8ecad40e93bfa260.nii.gz

Olin/sub-0050116/mri/ibsr_sub-0050116_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Olin/sub-0050116/mri/ibsr_sub-0050116_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050116/mri/it_sub-0050116_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fW/Qj/MD5E-s283--4a21d0d9d10aad5a8a8d0cedaa18ae1e.mat/MD5E-s283--4a21d0d9d10aad5a8a8d0cedaa18ae1e.mat

Olin/sub-0050116/mri/it_sub-0050116_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xk/5z/MD5E-s283--9ddeec75218015f5b3a6138bd09127cb.mat/MD5E-s283--9ddeec75218015f5b3a6138bd09127cb.mat

Olin/sub-0050116/mri/iy_sub-0050116_T1w.nii.gz

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+../../../.git/annex/objects/6Z/MZ/MD5E-s50094662--ab9c2b76787844367f27921344bcdfea.nii.gz/MD5E-s50094662--ab9c2b76787844367f27921344bcdfea.nii.gz

Olin/sub-0050116/mri/julichbrain_sub-0050116_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Olin/sub-0050116/mri/julichbrain_sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/lpba40_sub-0050116_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Olin/sub-0050116/mri/lpba40_sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/m0wp1sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/m0wp2sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/m0wp3sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/mori_sub-0050116_T1w.csv

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Olin/sub-0050116/mri/mori_sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/mwp1sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/mwp2sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/mwp3sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/neuromorphometrics_sub-0050116_T1w.csv

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Olin/sub-0050116/mri/neuromorphometrics_sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/p0sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/p1sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/p2sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/p3sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/rp1sub-0050116_T1w_affine.nii.gz

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Olin/sub-0050116/mri/rp2sub-0050116_T1w_affine.nii.gz

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Olin/sub-0050116/mri/rp3sub-0050116_T1w_affine.nii.gz

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Olin/sub-0050116/mri/t_sub-0050116_T1w_affine_reorient.mat

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Olin/sub-0050116/mri/t_sub-0050116_T1w_rigid_reorient.mat

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Olin/sub-0050116/mri/thalamus_sub-0050116_T1w.csv

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Olin/sub-0050116/mri/thalamus_sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/wj_sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/wmisub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/wmsub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/wp0sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/wp1sub-0050116_T1w.nii.gz

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Olin/sub-0050116/mri/wp2sub-0050116_T1w.nii.gz

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