[DATALAD RUNCMD] Compute UM_1/sub-0050307

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050307/anat/sub-0050307_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050307"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050307/label/catROI_sub-0050307_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/z9/0M/MD5E-s61395--6ea9762a4db22af2ad6c03d515a4aa05.mat/MD5E-s61395--6ea9762a4db22af2ad6c03d515a4aa05.mat

UM_1/sub-0050307/label/catROI_sub-0050307_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/jw/qX/MD5E-s189248--1049dbad049f98f0d5a25d8c3308f55e.xml/MD5E-s189248--1049dbad049f98f0d5a25d8c3308f55e.xml

UM_1/sub-0050307/label/catROIs_sub-0050307_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/X6/jw/MD5E-s120165--b3a6a467c13bfe8afdaf51f4db061401.mat/MD5E-s120165--b3a6a467c13bfe8afdaf51f4db061401.mat

UM_1/sub-0050307/label/catROIs_sub-0050307_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/4k/5Z/MD5E-s332121--ad7b7fa3eac82046de2a136950bc4d3d.xml/MD5E-s332121--ad7b7fa3eac82046de2a136950bc4d3d.xml

UM_1/sub-0050307/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050307_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050307/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kM/mZ/MD5E-s147110--5f26c5c4ee75eaf9d5764e0bcb9370a3.nii.gz/MD5E-s147110--5f26c5c4ee75eaf9d5764e0bcb9370a3.nii.gz

UM_1/sub-0050307/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050307_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050307/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qq/J2/MD5E-s165824--7f8904d5b4d2a9177b181eb285285716.nii.gz/MD5E-s165824--7f8904d5b4d2a9177b181eb285285716.nii.gz

UM_1/sub-0050307/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050307_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050307/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X1/p1/MD5E-s208949--af36c6ab8b50204e6b5e40e03f3e806e.nii.gz/MD5E-s208949--af36c6ab8b50204e6b5e40e03f3e806e.nii.gz

UM_1/sub-0050307/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050307_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050307/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QV/6j/MD5E-s233507--08b35bf248d6435fe7a7aeebee0280a2.nii.gz/MD5E-s233507--08b35bf248d6435fe7a7aeebee0280a2.nii.gz

UM_1/sub-0050307/mri/Tian_Subcortex_S2_7T_sub-0050307_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050307/mri/Tian_Subcortex_S2_7T_sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1j/01/MD5E-s20095--2fed74214f52da79f3d5a6b8f7a0ed7a.nii.gz/MD5E-s20095--2fed74214f52da79f3d5a6b8f7a0ed7a.nii.gz

UM_1/sub-0050307/mri/aal3_sub-0050307_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

UM_1/sub-0050307/mri/aal3_sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050307/mri/anatomy3_sub-0050307_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UM_1/sub-0050307/mri/anatomy3_sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8F/g5/MD5E-s117301--f1237646dfa1686998ffc6c67648584f.nii.gz/MD5E-s117301--f1237646dfa1686998ffc6c67648584f.nii.gz

UM_1/sub-0050307/mri/anon_misub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gf/f7/MD5E-s3175713--d83456998c7489f04067a9fe8429dee3.nii.gz/MD5E-s3175713--d83456998c7489f04067a9fe8429dee3.nii.gz

UM_1/sub-0050307/mri/anon_msub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p6/qX/MD5E-s6977887--f8dcdc4ecf1967b369430809f26d36eb.nii.gz/MD5E-s6977887--f8dcdc4ecf1967b369430809f26d36eb.nii.gz

UM_1/sub-0050307/mri/cat_sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4K/3Z/MD5E-s83733--0b780426346a9f1c27bce572720d073c.nii.gz/MD5E-s83733--0b780426346a9f1c27bce572720d073c.nii.gz

UM_1/sub-0050307/mri/cobra_sub-0050307_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050307/mri/cobra_sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M7/4j/MD5E-s39598--6153e7778050b7c7449c59a5e1f597e4.nii.gz/MD5E-s39598--6153e7778050b7c7449c59a5e1f597e4.nii.gz

UM_1/sub-0050307/mri/hammers_sub-0050307_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050307/mri/hammers_sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zw/99/MD5E-s128072--70dc59289db69db4fa4d566fa46d746e.nii.gz/MD5E-s128072--70dc59289db69db4fa4d566fa46d746e.nii.gz

UM_1/sub-0050307/mri/ibsr_sub-0050307_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

UM_1/sub-0050307/mri/ibsr_sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P9/qG/MD5E-s131174--5fcc249b6dbb8fad264a97a45c67154e.nii.gz/MD5E-s131174--5fcc249b6dbb8fad264a97a45c67154e.nii.gz

UM_1/sub-0050307/mri/it_sub-0050307_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/x1/xx/MD5E-s283--54841dd9b73009fcb8e71b429f0efe9a.mat/MD5E-s283--54841dd9b73009fcb8e71b429f0efe9a.mat

UM_1/sub-0050307/mri/it_sub-0050307_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/x4/QK/MD5E-s283--2a76a8d9c585a9054c41991bfb3d9912.mat/MD5E-s283--2a76a8d9c585a9054c41991bfb3d9912.mat

UM_1/sub-0050307/mri/iy_sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wM/QF/MD5E-s33655856--f1d88bdfd6fddea3371daf01e3875cfb.nii.gz/MD5E-s33655856--f1d88bdfd6fddea3371daf01e3875cfb.nii.gz

UM_1/sub-0050307/mri/julichbrain_sub-0050307_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_1/sub-0050307/mri/julichbrain_sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mg/58/MD5E-s174455--b554f5ae00bb3b05a4eff7029ad26e97.nii.gz/MD5E-s174455--b554f5ae00bb3b05a4eff7029ad26e97.nii.gz

UM_1/sub-0050307/mri/lpba40_sub-0050307_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

UM_1/sub-0050307/mri/lpba40_sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050307/mri/m0wp1sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XK/kj/MD5E-s2621264--a6a6cf8e6e4f70e07d897b409af689be.nii.gz/MD5E-s2621264--a6a6cf8e6e4f70e07d897b409af689be.nii.gz

UM_1/sub-0050307/mri/m0wp2sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050307/mri/m0wp3sub-0050307_T1w.nii.gz

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UM_1/sub-0050307/mri/mori_sub-0050307_T1w.csv

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UM_1/sub-0050307/mri/mori_sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050307/mri/mwp1sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050307/mri/mwp2sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050307/mri/mwp3sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050307/mri/neuromorphometrics_sub-0050307_T1w.csv

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UM_1/sub-0050307/mri/neuromorphometrics_sub-0050307_T1w.nii.gz

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UM_1/sub-0050307/mri/p0sub-0050307_T1w.nii.gz

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UM_1/sub-0050307/mri/p1sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050307/mri/p2sub-0050307_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050307/mri/p3sub-0050307_T1w.nii.gz

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UM_1/sub-0050307/mri/rp1sub-0050307_T1w_affine.nii.gz

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UM_1/sub-0050307/mri/rp2sub-0050307_T1w_affine.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050307/mri/rp3sub-0050307_T1w_affine.nii.gz

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UM_1/sub-0050307/mri/t_sub-0050307_T1w_affine_reorient.mat

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UM_1/sub-0050307/mri/t_sub-0050307_T1w_rigid_reorient.mat

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UM_1/sub-0050307/mri/thalamus_sub-0050307_T1w.csv

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UM_1/sub-0050307/mri/thalamus_sub-0050307_T1w.nii.gz

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UM_1/sub-0050307/mri/wj_sub-0050307_T1w.nii.gz

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UM_1/sub-0050307/mri/wmisub-0050307_T1w.nii.gz

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UM_1/sub-0050307/mri/wmsub-0050307_T1w.nii.gz

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UM_1/sub-0050307/mri/wp0sub-0050307_T1w.nii.gz

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UM_1/sub-0050307/mri/wp1sub-0050307_T1w.nii.gz

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UM_1/sub-0050307/mri/wp2sub-0050307_T1w.nii.gz

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UM_1/sub-0050307/mri/wp3sub-0050307_T1w.nii.gz

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