[DATALAD RUNCMD] Compute Olin/sub-0050119

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Olin/sub-0050119/anat/sub-0050119_T1w.nii.gz"
 ],
 "outputs": [
  "Olin/sub-0050119"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Olin/sub-0050119/label/catROI_sub-0050119_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/wj/GW/MD5E-s57928--10fd408b6d74ed5480a0337bfda9d552.mat/MD5E-s57928--10fd408b6d74ed5480a0337bfda9d552.mat

Olin/sub-0050119/label/catROI_sub-0050119_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/j7/08/MD5E-s188830--a4092f2440bfc3a8f6b189523f193ff4.xml/MD5E-s188830--a4092f2440bfc3a8f6b189523f193ff4.xml

Olin/sub-0050119/label/catROIs_sub-0050119_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zp/3m/MD5E-s120248--6368f3b6825fbe0341d062bc01fd0b7e.mat/MD5E-s120248--6368f3b6825fbe0341d062bc01fd0b7e.mat

Olin/sub-0050119/label/catROIs_sub-0050119_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/vw/f5/MD5E-s332177--a7175f335902582d58cf0205b54dc383.xml/MD5E-s332177--a7175f335902582d58cf0205b54dc383.xml

Olin/sub-0050119/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050119_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Olin/sub-0050119/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050119_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/76/MZ/MD5E-s172539--075ff40e58d219822b8ceac7be25ec13.nii.gz/MD5E-s172539--075ff40e58d219822b8ceac7be25ec13.nii.gz

Olin/sub-0050119/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050119_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Olin/sub-0050119/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050119_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0X/xp/MD5E-s193610--3917a8b13ec381e689816ead308a7a18.nii.gz/MD5E-s193610--3917a8b13ec381e689816ead308a7a18.nii.gz

Olin/sub-0050119/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050119_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Olin/sub-0050119/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050119_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P1/55/MD5E-s248333--498509a6d3de48b5495668974477cc5f.nii.gz/MD5E-s248333--498509a6d3de48b5495668974477cc5f.nii.gz

Olin/sub-0050119/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050119_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Olin/sub-0050119/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050119_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V2/4k/MD5E-s278121--4f7c6e68171fc7bcfba5d8e0eaefa125.nii.gz/MD5E-s278121--4f7c6e68171fc7bcfba5d8e0eaefa125.nii.gz

Olin/sub-0050119/mri/Tian_Subcortex_S2_7T_sub-0050119_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Olin/sub-0050119/mri/Tian_Subcortex_S2_7T_sub-0050119_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050119/mri/aal3_sub-0050119_T1w.csv

@@ -0,0 +1 @@
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Olin/sub-0050119/mri/aal3_sub-0050119_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050119/mri/anatomy3_sub-0050119_T1w.csv

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Olin/sub-0050119/mri/anatomy3_sub-0050119_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/06/fV/MD5E-s142009--d3cbbdc75e82291db3845412eaeef38c.nii.gz/MD5E-s142009--d3cbbdc75e82291db3845412eaeef38c.nii.gz

Olin/sub-0050119/mri/anon_misub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/anon_msub-0050119_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5z/Pw/MD5E-s9539818--15538b0af01f78bf2e5136cb4a427d16.nii.gz/MD5E-s9539818--15538b0af01f78bf2e5136cb4a427d16.nii.gz

Olin/sub-0050119/mri/cat_sub-0050119_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050119/mri/cobra_sub-0050119_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Olin/sub-0050119/mri/cobra_sub-0050119_T1w.nii.gz

@@ -0,0 +1 @@
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Olin/sub-0050119/mri/hammers_sub-0050119_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Olin/sub-0050119/mri/hammers_sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/ibsr_sub-0050119_T1w.csv

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Olin/sub-0050119/mri/ibsr_sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/it_sub-0050119_T1w_affine_reorient.mat

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Olin/sub-0050119/mri/it_sub-0050119_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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Olin/sub-0050119/mri/iy_sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/julichbrain_sub-0050119_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Olin/sub-0050119/mri/julichbrain_sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/lpba40_sub-0050119_T1w.csv

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Olin/sub-0050119/mri/lpba40_sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/m0wp1sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/m0wp2sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/m0wp3sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/mori_sub-0050119_T1w.csv

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Olin/sub-0050119/mri/mori_sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/mwp1sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/mwp2sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/mwp3sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/neuromorphometrics_sub-0050119_T1w.csv

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Olin/sub-0050119/mri/neuromorphometrics_sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/p0sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/p1sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/p2sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/p3sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/rp1sub-0050119_T1w_affine.nii.gz

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Olin/sub-0050119/mri/rp2sub-0050119_T1w_affine.nii.gz

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Olin/sub-0050119/mri/rp3sub-0050119_T1w_affine.nii.gz

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Olin/sub-0050119/mri/t_sub-0050119_T1w_affine_reorient.mat

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Olin/sub-0050119/mri/t_sub-0050119_T1w_rigid_reorient.mat

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Olin/sub-0050119/mri/thalamus_sub-0050119_T1w.csv

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Olin/sub-0050119/mri/thalamus_sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/wj_sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/wmisub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/wmsub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/wp0sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/wp1sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/wp2sub-0050119_T1w.nii.gz

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Olin/sub-0050119/mri/wp3sub-0050119_T1w.nii.gz

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