[DATALAD RUNCMD] Compute CMU_b/sub-0050644

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/CMU_b/sub-0050644/anat/sub-0050644_T1w.nii.gz"
 ],
 "outputs": [
  "CMU_b/sub-0050644"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

CMU_b/sub-0050644/label/catROI_sub-0050644_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/W4/pm/MD5E-s57934--7e18f8f0e683c6d470183f26bc572cbb.mat/MD5E-s57934--7e18f8f0e683c6d470183f26bc572cbb.mat

CMU_b/sub-0050644/label/catROI_sub-0050644_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/MV/zX/MD5E-s188735--4fbae5d2e345484d0504c9c02232d128.xml/MD5E-s188735--4fbae5d2e345484d0504c9c02232d128.xml

CMU_b/sub-0050644/label/catROIs_sub-0050644_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/W9/mV/MD5E-s120136--d1dd409dd9318c6226dcd154205e5876.mat/MD5E-s120136--d1dd409dd9318c6226dcd154205e5876.mat

CMU_b/sub-0050644/label/catROIs_sub-0050644_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/xG/q5/MD5E-s332121--5fb581b306deae7d90cf64968a726872.xml/MD5E-s332121--5fb581b306deae7d90cf64968a726872.xml

CMU_b/sub-0050644/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050644_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

CMU_b/sub-0050644/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/86/vP/MD5E-s169828--93fb9189829f85f5b10e1c7d81af1416.nii.gz/MD5E-s169828--93fb9189829f85f5b10e1c7d81af1416.nii.gz

CMU_b/sub-0050644/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050644_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

CMU_b/sub-0050644/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xj/m1/MD5E-s190056--eed0ae3297d6e4ecd040b51667361fbc.nii.gz/MD5E-s190056--eed0ae3297d6e4ecd040b51667361fbc.nii.gz

CMU_b/sub-0050644/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050644_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

CMU_b/sub-0050644/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MW/K8/MD5E-s255283--ee41a7dfd2315a122507edf8d6ccc7df.nii.gz/MD5E-s255283--ee41a7dfd2315a122507edf8d6ccc7df.nii.gz

CMU_b/sub-0050644/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050644_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

CMU_b/sub-0050644/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2X/m9/MD5E-s285171--5114cc2b581d7ce62c940bc799d92d78.nii.gz/MD5E-s285171--5114cc2b581d7ce62c940bc799d92d78.nii.gz

CMU_b/sub-0050644/mri/Tian_Subcortex_S2_7T_sub-0050644_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

CMU_b/sub-0050644/mri/Tian_Subcortex_S2_7T_sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/61/w3/MD5E-s24363--4805bd5096dd2dc0bb9a33da46cb1649.nii.gz/MD5E-s24363--4805bd5096dd2dc0bb9a33da46cb1649.nii.gz

CMU_b/sub-0050644/mri/aal3_sub-0050644_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

CMU_b/sub-0050644/mri/aal3_sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wp/xm/MD5E-s193465--b48c1b6ed15a76987d8d2d5b4d8224f5.nii.gz/MD5E-s193465--b48c1b6ed15a76987d8d2d5b4d8224f5.nii.gz

CMU_b/sub-0050644/mri/anatomy3_sub-0050644_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

CMU_b/sub-0050644/mri/anatomy3_sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f9/4v/MD5E-s138205--7de1d73152a045e3b36d43da17c219b7.nii.gz/MD5E-s138205--7de1d73152a045e3b36d43da17c219b7.nii.gz

CMU_b/sub-0050644/mri/anon_misub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2m/g6/MD5E-s9365152--5bde5742429cdb40fcc0b3f35be35234.nii.gz/MD5E-s9365152--5bde5742429cdb40fcc0b3f35be35234.nii.gz

CMU_b/sub-0050644/mri/anon_msub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zv/qz/MD5E-s10550933--1f3857fc2a3ddda1a16792065ad7e2c7.nii.gz/MD5E-s10550933--1f3857fc2a3ddda1a16792065ad7e2c7.nii.gz

CMU_b/sub-0050644/mri/cat_sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fm/17/MD5E-s101113--2ecb59f3616a821bbb29706dbf2eb9fd.nii.gz/MD5E-s101113--2ecb59f3616a821bbb29706dbf2eb9fd.nii.gz

CMU_b/sub-0050644/mri/cobra_sub-0050644_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

CMU_b/sub-0050644/mri/cobra_sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GQ/1X/MD5E-s47424--573c4440ba9f4532a204a22142100153.nii.gz/MD5E-s47424--573c4440ba9f4532a204a22142100153.nii.gz

CMU_b/sub-0050644/mri/hammers_sub-0050644_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

CMU_b/sub-0050644/mri/hammers_sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W6/73/MD5E-s147888--d1a88ee8fd0f7ef3920c61fc02fb77cd.nii.gz/MD5E-s147888--d1a88ee8fd0f7ef3920c61fc02fb77cd.nii.gz

CMU_b/sub-0050644/mri/ibsr_sub-0050644_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

CMU_b/sub-0050644/mri/ibsr_sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gv/4J/MD5E-s158637--918ff078bde3463ffe9414bd80d8c7f1.nii.gz/MD5E-s158637--918ff078bde3463ffe9414bd80d8c7f1.nii.gz

CMU_b/sub-0050644/mri/it_sub-0050644_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/F8/fP/MD5E-s282--59ea0c7a8fb93c2485faba5eaca90c84.mat/MD5E-s282--59ea0c7a8fb93c2485faba5eaca90c84.mat

CMU_b/sub-0050644/mri/it_sub-0050644_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/59/fW/MD5E-s283--1a1d6e26d654578911f5787d98ef1df1.mat/MD5E-s283--1a1d6e26d654578911f5787d98ef1df1.mat

CMU_b/sub-0050644/mri/iy_sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M1/XV/MD5E-s46002668--8718c1413a1b62403fe720b784c1e967.nii.gz/MD5E-s46002668--8718c1413a1b62403fe720b784c1e967.nii.gz

CMU_b/sub-0050644/mri/julichbrain_sub-0050644_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

CMU_b/sub-0050644/mri/julichbrain_sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/89/V2/MD5E-s201148--42fec1c7adf614689e6b0e86491fb3e8.nii.gz/MD5E-s201148--42fec1c7adf614689e6b0e86491fb3e8.nii.gz

CMU_b/sub-0050644/mri/lpba40_sub-0050644_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

CMU_b/sub-0050644/mri/lpba40_sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GX/zZ/MD5E-s146831--3cc5d9fe3e547564c7efc7137f7470c7.nii.gz/MD5E-s146831--3cc5d9fe3e547564c7efc7137f7470c7.nii.gz

CMU_b/sub-0050644/mri/m0wp1sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kX/wq/MD5E-s2584338--a412d5edb545ef995720cbffb3491863.nii.gz/MD5E-s2584338--a412d5edb545ef995720cbffb3491863.nii.gz

CMU_b/sub-0050644/mri/m0wp2sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/99/J5/MD5E-s2305015--f5d847fa6a7a3c01b44b371e95dd2ffa.nii.gz/MD5E-s2305015--f5d847fa6a7a3c01b44b371e95dd2ffa.nii.gz

CMU_b/sub-0050644/mri/m0wp3sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g3/zP/MD5E-s2462786--131eec46c1e951b19a8d614f7b46edb5.nii.gz/MD5E-s2462786--131eec46c1e951b19a8d614f7b46edb5.nii.gz

CMU_b/sub-0050644/mri/mori_sub-0050644_T1w.csv

@@ -0,0 +1 @@
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CMU_b/sub-0050644/mri/mori_sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w5/vJ/MD5E-s174661--adb776224cf6f3cb2fbae4df0476cd3e.nii.gz/MD5E-s174661--adb776224cf6f3cb2fbae4df0476cd3e.nii.gz

CMU_b/sub-0050644/mri/mwp1sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8w/KX/MD5E-s2585451--9b2f233b875257406b7467a206065a41.nii.gz/MD5E-s2585451--9b2f233b875257406b7467a206065a41.nii.gz

CMU_b/sub-0050644/mri/mwp2sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j1/xj/MD5E-s2302984--5e9742582cf9e3cd9cb06c73499f71b7.nii.gz/MD5E-s2302984--5e9742582cf9e3cd9cb06c73499f71b7.nii.gz

CMU_b/sub-0050644/mri/mwp3sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3X/5p/MD5E-s2459438--ac9366f475073ff92423e5d053e0f272.nii.gz/MD5E-s2459438--ac9366f475073ff92423e5d053e0f272.nii.gz

CMU_b/sub-0050644/mri/neuromorphometrics_sub-0050644_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

CMU_b/sub-0050644/mri/neuromorphometrics_sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zv/00/MD5E-s202102--95daaabb3686ad5c5e62e1e6b85776ea.nii.gz/MD5E-s202102--95daaabb3686ad5c5e62e1e6b85776ea.nii.gz

CMU_b/sub-0050644/mri/p0sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/93/mw/MD5E-s624430--188cbb8ab8dc22ab8026f5a922079e78.nii.gz/MD5E-s624430--188cbb8ab8dc22ab8026f5a922079e78.nii.gz

CMU_b/sub-0050644/mri/p1sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4j/p2/MD5E-s666292--d610440923e6af9456f2d686100bdfe4.nii.gz/MD5E-s666292--d610440923e6af9456f2d686100bdfe4.nii.gz

CMU_b/sub-0050644/mri/p2sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050644/mri/p3sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050644/mri/rp1sub-0050644_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/40/px/MD5E-s445915--a2277cdeba6450cf32449a540fe5b22f.nii.gz/MD5E-s445915--a2277cdeba6450cf32449a540fe5b22f.nii.gz

CMU_b/sub-0050644/mri/rp2sub-0050644_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jw/PQ/MD5E-s309484--f12d37ce0da39bc8376eb52e5f193288.nii.gz/MD5E-s309484--f12d37ce0da39bc8376eb52e5f193288.nii.gz

CMU_b/sub-0050644/mri/rp3sub-0050644_T1w_affine.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050644/mri/t_sub-0050644_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wv/Gk/MD5E-s284--2bc1a3777d4c9002320b8b1c03f87946.mat/MD5E-s284--2bc1a3777d4c9002320b8b1c03f87946.mat

CMU_b/sub-0050644/mri/t_sub-0050644_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/0P/G1/MD5E-s284--2e86b1ff9cce2fa443495efe364a33f9.mat/MD5E-s284--2e86b1ff9cce2fa443495efe364a33f9.mat

CMU_b/sub-0050644/mri/thalamus_sub-0050644_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

CMU_b/sub-0050644/mri/thalamus_sub-0050644_T1w.nii.gz

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CMU_b/sub-0050644/mri/wj_sub-0050644_T1w.nii.gz

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CMU_b/sub-0050644/mri/wmisub-0050644_T1w.nii.gz

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CMU_b/sub-0050644/mri/wmsub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050644/mri/wp0sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050644/mri/wp1sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050644/mri/wp2sub-0050644_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_b/sub-0050644/mri/wp3sub-0050644_T1w.nii.gz

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