[DATALAD RUNCMD] Compute MaxMun_c/sub-0051334

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/MaxMun_c/sub-0051334/anat/sub-0051334_T1w.nii.gz"
 ],
 "outputs": [
  "MaxMun_c/sub-0051334"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MaxMun_c/sub-0051334/label/catROI_sub-0051334_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pk/42/MD5E-s59321--52f48af20bf2153966f13b749216f402.mat/MD5E-s59321--52f48af20bf2153966f13b749216f402.mat

MaxMun_c/sub-0051334/label/catROI_sub-0051334_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/JZ/Mq/MD5E-s188855--658c4892b01379c5446f39a2d24a5ab1.xml/MD5E-s188855--658c4892b01379c5446f39a2d24a5ab1.xml

MaxMun_c/sub-0051334/label/catROIs_sub-0051334_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/J1/p1/MD5E-s120249--959f3415f301ed440ee7097f2643914e.mat/MD5E-s120249--959f3415f301ed440ee7097f2643914e.mat

MaxMun_c/sub-0051334/label/catROIs_sub-0051334_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/3q/G2/MD5E-s332115--4bd7d96f909476cfce262dd1c7fac2b2.xml/MD5E-s332115--4bd7d96f909476cfce262dd1c7fac2b2.xml

MaxMun_c/sub-0051334/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051334_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MaxMun_c/sub-0051334/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K6/mk/MD5E-s191173--020ab80bae4c870f2da0e74fc44c8242.nii.gz/MD5E-s191173--020ab80bae4c870f2da0e74fc44c8242.nii.gz

MaxMun_c/sub-0051334/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051334_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MaxMun_c/sub-0051334/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P4/Pm/MD5E-s216485--ec0d567517f0836db99a563406d64619.nii.gz/MD5E-s216485--ec0d567517f0836db99a563406d64619.nii.gz

MaxMun_c/sub-0051334/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051334_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MaxMun_c/sub-0051334/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G1/zV/MD5E-s290655--002995f4de2e1856893efa132fcaf8be.nii.gz/MD5E-s290655--002995f4de2e1856893efa132fcaf8be.nii.gz

MaxMun_c/sub-0051334/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051334_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MaxMun_c/sub-0051334/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gX/WK/MD5E-s322496--2d1b3b72f3a086db88c8219fb0c6e2f8.nii.gz/MD5E-s322496--2d1b3b72f3a086db88c8219fb0c6e2f8.nii.gz

MaxMun_c/sub-0051334/mri/Tian_Subcortex_S2_7T_sub-0051334_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MaxMun_c/sub-0051334/mri/Tian_Subcortex_S2_7T_sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kP/2X/MD5E-s24433--de0fa0336dda53e255b821972fa86e94.nii.gz/MD5E-s24433--de0fa0336dda53e255b821972fa86e94.nii.gz

MaxMun_c/sub-0051334/mri/aal3_sub-0051334_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MaxMun_c/sub-0051334/mri/aal3_sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051334/mri/anatomy3_sub-0051334_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MaxMun_c/sub-0051334/mri/anatomy3_sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051334/mri/anon_misub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gk/fK/MD5E-s8531029--98d409a036a26f46dd4d1f595d6aee0a.nii.gz/MD5E-s8531029--98d409a036a26f46dd4d1f595d6aee0a.nii.gz

MaxMun_c/sub-0051334/mri/anon_msub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VK/q3/MD5E-s8902596--3d1b6b8cbfe026d956cc0a856134b031.nii.gz/MD5E-s8902596--3d1b6b8cbfe026d956cc0a856134b031.nii.gz

MaxMun_c/sub-0051334/mri/cat_sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vm/fj/MD5E-s123271--90dad279b2941a8f6960385c0d48a9da.nii.gz/MD5E-s123271--90dad279b2941a8f6960385c0d48a9da.nii.gz

MaxMun_c/sub-0051334/mri/cobra_sub-0051334_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MaxMun_c/sub-0051334/mri/cobra_sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0p/Xf/MD5E-s50340--e910b4f5431d0732838591daccea6bb0.nii.gz/MD5E-s50340--e910b4f5431d0732838591daccea6bb0.nii.gz

MaxMun_c/sub-0051334/mri/hammers_sub-0051334_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MaxMun_c/sub-0051334/mri/hammers_sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051334/mri/ibsr_sub-0051334_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MaxMun_c/sub-0051334/mri/ibsr_sub-0051334_T1w.nii.gz

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MaxMun_c/sub-0051334/mri/it_sub-0051334_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/77/9Z/MD5E-s283--5491e5da2cdf706d84a14e2fd4777d3b.mat/MD5E-s283--5491e5da2cdf706d84a14e2fd4777d3b.mat

MaxMun_c/sub-0051334/mri/it_sub-0051334_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gj/71/MD5E-s283--002f5a02b1eeae430e4243eb1f0d267e.mat/MD5E-s283--002f5a02b1eeae430e4243eb1f0d267e.mat

MaxMun_c/sub-0051334/mri/iy_sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vZ/31/MD5E-s55605080--dc3b0456ef5a23b7b2b48b35a719048a.nii.gz/MD5E-s55605080--dc3b0456ef5a23b7b2b48b35a719048a.nii.gz

MaxMun_c/sub-0051334/mri/julichbrain_sub-0051334_T1w.csv

@@ -0,0 +1 @@
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MaxMun_c/sub-0051334/mri/julichbrain_sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1M/p1/MD5E-s231225--3b152f023d5ae441ccfb790607f43d2a.nii.gz/MD5E-s231225--3b152f023d5ae441ccfb790607f43d2a.nii.gz

MaxMun_c/sub-0051334/mri/lpba40_sub-0051334_T1w.csv

@@ -0,0 +1 @@
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MaxMun_c/sub-0051334/mri/lpba40_sub-0051334_T1w.nii.gz

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MaxMun_c/sub-0051334/mri/m0wp1sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051334/mri/m0wp2sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xg/kx/MD5E-s2450291--02a9a7adbc9bac3ef6d327f8b30b3e93.nii.gz/MD5E-s2450291--02a9a7adbc9bac3ef6d327f8b30b3e93.nii.gz

MaxMun_c/sub-0051334/mri/m0wp3sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051334/mri/mori_sub-0051334_T1w.csv

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MaxMun_c/sub-0051334/mri/mori_sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051334/mri/mwp1sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qw/7M/MD5E-s2572887--8de94e5dcd4cea0232d13d4276bd74a0.nii.gz/MD5E-s2572887--8de94e5dcd4cea0232d13d4276bd74a0.nii.gz

MaxMun_c/sub-0051334/mri/mwp2sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051334/mri/mwp3sub-0051334_T1w.nii.gz

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MaxMun_c/sub-0051334/mri/neuromorphometrics_sub-0051334_T1w.csv

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MaxMun_c/sub-0051334/mri/neuromorphometrics_sub-0051334_T1w.nii.gz

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MaxMun_c/sub-0051334/mri/p0sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051334/mri/p1sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051334/mri/p2sub-0051334_T1w.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051334/mri/p3sub-0051334_T1w.nii.gz

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MaxMun_c/sub-0051334/mri/rp1sub-0051334_T1w_affine.nii.gz

@@ -0,0 +1 @@
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MaxMun_c/sub-0051334/mri/rp2sub-0051334_T1w_affine.nii.gz

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MaxMun_c/sub-0051334/mri/rp3sub-0051334_T1w_affine.nii.gz

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MaxMun_c/sub-0051334/mri/t_sub-0051334_T1w_affine_reorient.mat

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MaxMun_c/sub-0051334/mri/t_sub-0051334_T1w_rigid_reorient.mat

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MaxMun_c/sub-0051334/mri/thalamus_sub-0051334_T1w.csv

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MaxMun_c/sub-0051334/mri/thalamus_sub-0051334_T1w.nii.gz

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MaxMun_c/sub-0051334/mri/wj_sub-0051334_T1w.nii.gz

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MaxMun_c/sub-0051334/mri/wmisub-0051334_T1w.nii.gz

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MaxMun_c/sub-0051334/mri/wmsub-0051334_T1w.nii.gz

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MaxMun_c/sub-0051334/mri/wp0sub-0051334_T1w.nii.gz

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MaxMun_c/sub-0051334/mri/wp1sub-0051334_T1w.nii.gz

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MaxMun_c/sub-0051334/report/catlog_sub-0051334_T1w.nii.txt

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MaxMun_c/sub-0051334/report/catreport_sub-0051334_T1w.pdf

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MaxMun_c/sub-0051334/report/catreportj_sub-0051334_T1w.jpg

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