[DATALAD RUNCMD] Compute Yale/sub-0050573

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Yale/sub-0050573/anat/sub-0050573_T1w.nii.gz"
 ],
 "outputs": [
  "Yale/sub-0050573"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Yale/sub-0050573/label/catROI_sub-0050573_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/KK/Qg/MD5E-s57850--8a7cf00c00e169b3ab5dcc2c542ee3a9.mat/MD5E-s57850--8a7cf00c00e169b3ab5dcc2c542ee3a9.mat

Yale/sub-0050573/label/catROI_sub-0050573_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vx/px/MD5E-s189009--fb7f63ac563a42ff9846f883959483ff.xml/MD5E-s189009--fb7f63ac563a42ff9846f883959483ff.xml

Yale/sub-0050573/label/catROIs_sub-0050573_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZP/3K/MD5E-s120043--c33b2c7b0ed99e9e6c1bf6dfeb4f70cd.mat/MD5E-s120043--c33b2c7b0ed99e9e6c1bf6dfeb4f70cd.mat

Yale/sub-0050573/label/catROIs_sub-0050573_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/G8/FG/MD5E-s331772--5921be7be6f234890824bf6c122a557a.xml/MD5E-s331772--5921be7be6f234890824bf6c122a557a.xml

Yale/sub-0050573/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050573_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Yale/sub-0050573/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050573_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9W/xQ/MD5E-s166171--2e8f3689f347161d2e28d9ced59af4bc.nii.gz/MD5E-s166171--2e8f3689f347161d2e28d9ced59af4bc.nii.gz

Yale/sub-0050573/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050573_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Yale/sub-0050573/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050573_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6z/52/MD5E-s186005--8e1e0e881df404c54c6cc21d91b43e27.nii.gz/MD5E-s186005--8e1e0e881df404c54c6cc21d91b43e27.nii.gz

Yale/sub-0050573/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050573_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Yale/sub-0050573/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050573_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9z/5z/MD5E-s252072--d28ea9431759c9bddd66e5fdc0534c28.nii.gz/MD5E-s252072--d28ea9431759c9bddd66e5fdc0534c28.nii.gz

Yale/sub-0050573/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050573_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Yale/sub-0050573/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050573_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p8/P6/MD5E-s279442--af74b0c74f8aeb7cf7d642afb6a470e5.nii.gz/MD5E-s279442--af74b0c74f8aeb7cf7d642afb6a470e5.nii.gz

Yale/sub-0050573/mri/Tian_Subcortex_S2_7T_sub-0050573_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Yale/sub-0050573/mri/Tian_Subcortex_S2_7T_sub-0050573_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qj/wz/MD5E-s23570--a91100c1224fb8283bf6ecd886eb9d06.nii.gz/MD5E-s23570--a91100c1224fb8283bf6ecd886eb9d06.nii.gz

Yale/sub-0050573/mri/aal3_sub-0050573_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Yale/sub-0050573/mri/aal3_sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/anatomy3_sub-0050573_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Yale/sub-0050573/mri/anatomy3_sub-0050573_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w1/5w/MD5E-s134525--a54783447638bd57cbba367d818e6d13.nii.gz/MD5E-s134525--a54783447638bd57cbba367d818e6d13.nii.gz

Yale/sub-0050573/mri/anon_misub-0050573_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZP/gm/MD5E-s4633540--4de92a425288debf3321424760ce3ee0.nii.gz/MD5E-s4633540--4de92a425288debf3321424760ce3ee0.nii.gz

Yale/sub-0050573/mri/anon_msub-0050573_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mv/w3/MD5E-s10499432--aba9fab0e7066b7176d25528df3df569.nii.gz/MD5E-s10499432--aba9fab0e7066b7176d25528df3df569.nii.gz

Yale/sub-0050573/mri/cat_sub-0050573_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z3/zJ/MD5E-s96033--20df820d412d329ec09c92490714e909.nii.gz/MD5E-s96033--20df820d412d329ec09c92490714e909.nii.gz

Yale/sub-0050573/mri/cobra_sub-0050573_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Yale/sub-0050573/mri/cobra_sub-0050573_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w3/10/MD5E-s46220--83a894914058a6a09bb586ab48d33590.nii.gz/MD5E-s46220--83a894914058a6a09bb586ab48d33590.nii.gz

Yale/sub-0050573/mri/hammers_sub-0050573_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Yale/sub-0050573/mri/hammers_sub-0050573_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XW/26/MD5E-s145106--b72223a99a3cd56696a46838bf5b9466.nii.gz/MD5E-s145106--b72223a99a3cd56696a46838bf5b9466.nii.gz

Yale/sub-0050573/mri/ibsr_sub-0050573_T1w.csv

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Yale/sub-0050573/mri/ibsr_sub-0050573_T1w.nii.gz

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+../../../.git/annex/objects/Zk/Vf/MD5E-s156178--bc117c907d8696a1a89aa4251e4d5ee5.nii.gz/MD5E-s156178--bc117c907d8696a1a89aa4251e4d5ee5.nii.gz

Yale/sub-0050573/mri/it_sub-0050573_T1w_affine_reorient.mat

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Yale/sub-0050573/mri/it_sub-0050573_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/zv/mG/MD5E-s282--06cf5e8ceefd14fb7aa4e2f3924054d6.mat/MD5E-s282--06cf5e8ceefd14fb7aa4e2f3924054d6.mat

Yale/sub-0050573/mri/iy_sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/julichbrain_sub-0050573_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Yale/sub-0050573/mri/julichbrain_sub-0050573_T1w.nii.gz

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+../../../.git/annex/objects/fm/QQ/MD5E-s199708--088f3094d19227d37441f48d2a648e59.nii.gz/MD5E-s199708--088f3094d19227d37441f48d2a648e59.nii.gz

Yale/sub-0050573/mri/lpba40_sub-0050573_T1w.csv

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+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Yale/sub-0050573/mri/lpba40_sub-0050573_T1w.nii.gz

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+../../../.git/annex/objects/2X/76/MD5E-s143883--7d369c5046ee226a8195c6b8c5c891d4.nii.gz/MD5E-s143883--7d369c5046ee226a8195c6b8c5c891d4.nii.gz

Yale/sub-0050573/mri/m0wp1sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/m0wp2sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/m0wp3sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/mori_sub-0050573_T1w.csv

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Yale/sub-0050573/mri/mori_sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/mwp1sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/mwp2sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/mwp3sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/neuromorphometrics_sub-0050573_T1w.csv

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Yale/sub-0050573/mri/neuromorphometrics_sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/p0sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/p1sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/p2sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/p3sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/rp1sub-0050573_T1w_affine.nii.gz

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Yale/sub-0050573/mri/rp2sub-0050573_T1w_affine.nii.gz

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Yale/sub-0050573/mri/rp3sub-0050573_T1w_affine.nii.gz

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Yale/sub-0050573/mri/t_sub-0050573_T1w_affine_reorient.mat

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Yale/sub-0050573/mri/t_sub-0050573_T1w_rigid_reorient.mat

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Yale/sub-0050573/mri/thalamus_sub-0050573_T1w.csv

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Yale/sub-0050573/mri/thalamus_sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/wj_sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/wmisub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/wmsub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/wp0sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/wp1sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/wp2sub-0050573_T1w.nii.gz

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Yale/sub-0050573/mri/wp3sub-0050573_T1w.nii.gz

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