[DATALAD RUNCMD] Compute USM/sub-0050437

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050437/anat/sub-0050437_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050437"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050437/label/catROI_sub-0050437_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/1Q/fF/MD5E-s61378--95cbd7732076a3a433767e94bbe2da91.mat/MD5E-s61378--95cbd7732076a3a433767e94bbe2da91.mat

USM/sub-0050437/label/catROI_sub-0050437_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mg/qv/MD5E-s188707--2e0bfb557c9b86d09011222e3d4b228b.xml/MD5E-s188707--2e0bfb557c9b86d09011222e3d4b228b.xml

USM/sub-0050437/label/catROIs_sub-0050437_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fw/g7/MD5E-s120065--9a21beb152d46e03b2856c5c3f4167dd.mat/MD5E-s120065--9a21beb152d46e03b2856c5c3f4167dd.mat

USM/sub-0050437/label/catROIs_sub-0050437_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/GX/f5/MD5E-s332139--564b4f93019344fa806bdc54932ecdcc.xml/MD5E-s332139--564b4f93019344fa806bdc54932ecdcc.xml

USM/sub-0050437/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050437_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050437/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050437_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J3/8Q/MD5E-s409273--5036b0634b8d38fd5f2fd260d889be26.nii.gz/MD5E-s409273--5036b0634b8d38fd5f2fd260d889be26.nii.gz

USM/sub-0050437/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050437_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050437/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050437_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VW/mZ/MD5E-s455302--001f4bc16c4e4c5395fdb8931665c693.nii.gz/MD5E-s455302--001f4bc16c4e4c5395fdb8931665c693.nii.gz

USM/sub-0050437/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050437_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050437/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050437_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WK/zk/MD5E-s654743--668dfdc0526b943527bd0f35117f24c6.nii.gz/MD5E-s654743--668dfdc0526b943527bd0f35117f24c6.nii.gz

USM/sub-0050437/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050437_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050437/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050437_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fp/96/MD5E-s720628--349774d658d8e298b2eb2df2aeb5dc49.nii.gz/MD5E-s720628--349774d658d8e298b2eb2df2aeb5dc49.nii.gz

USM/sub-0050437/mri/Tian_Subcortex_S2_7T_sub-0050437_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050437/mri/Tian_Subcortex_S2_7T_sub-0050437_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jm/pq/MD5E-s70256--5dcd77cac6db44c9f0b3c95b2f001292.nii.gz/MD5E-s70256--5dcd77cac6db44c9f0b3c95b2f001292.nii.gz

USM/sub-0050437/mri/aal3_sub-0050437_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050437/mri/aal3_sub-0050437_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vw/jQ/MD5E-s459024--1e53a71e517e2a2fd7ffd5398610f40b.nii.gz/MD5E-s459024--1e53a71e517e2a2fd7ffd5398610f40b.nii.gz

USM/sub-0050437/mri/anatomy3_sub-0050437_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050437/mri/anatomy3_sub-0050437_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/12/G4/MD5E-s345798--52d5a461124bf6d88d39529abacc245a.nii.gz/MD5E-s345798--52d5a461124bf6d88d39529abacc245a.nii.gz

USM/sub-0050437/mri/anon_misub-0050437_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m1/vf/MD5E-s18407077--97acd521c4c59270e6f6689069a83165.nii.gz/MD5E-s18407077--97acd521c4c59270e6f6689069a83165.nii.gz

USM/sub-0050437/mri/anon_msub-0050437_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0k/26/MD5E-s35191689--a9d78382689fb143e09e1204ea6f3e21.nii.gz/MD5E-s35191689--a9d78382689fb143e09e1204ea6f3e21.nii.gz

USM/sub-0050437/mri/cat_sub-0050437_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mp/mz/MD5E-s254213--450f0ec11f23de1fffb11f233308ef84.nii.gz/MD5E-s254213--450f0ec11f23de1fffb11f233308ef84.nii.gz

USM/sub-0050437/mri/cobra_sub-0050437_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050437/mri/cobra_sub-0050437_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vk/Xk/MD5E-s133913--4bc31d2302c4b3e978c980e6316df963.nii.gz/MD5E-s133913--4bc31d2302c4b3e978c980e6316df963.nii.gz

USM/sub-0050437/mri/hammers_sub-0050437_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050437/mri/hammers_sub-0050437_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/12/8z/MD5E-s366747--5eef84037452e9af08914e1a24d0df72.nii.gz/MD5E-s366747--5eef84037452e9af08914e1a24d0df72.nii.gz

USM/sub-0050437/mri/ibsr_sub-0050437_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050437/mri/ibsr_sub-0050437_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qK/9j/MD5E-s392188--4e96f087dca0399804ec39f897a1df9f.nii.gz/MD5E-s392188--4e96f087dca0399804ec39f897a1df9f.nii.gz

USM/sub-0050437/mri/it_sub-0050437_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kz/38/MD5E-s283--76905ee982708be48bcc558af3260575.mat/MD5E-s283--76905ee982708be48bcc558af3260575.mat

USM/sub-0050437/mri/it_sub-0050437_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/15/7V/MD5E-s283--a1afda6cfa4810de42e5f1520dd61583.mat/MD5E-s283--a1afda6cfa4810de42e5f1520dd61583.mat

USM/sub-0050437/mri/iy_sub-0050437_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P4/fw/MD5E-s164025056--c8859e314d7bb5b679db1d357281e011.nii.gz/MD5E-s164025056--c8859e314d7bb5b679db1d357281e011.nii.gz

USM/sub-0050437/mri/julichbrain_sub-0050437_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050437/mri/julichbrain_sub-0050437_T1w.nii.gz

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+../../../.git/annex/objects/JG/14/MD5E-s487137--d86f11a3dd9029da69fb097b8a1abbd7.nii.gz/MD5E-s487137--d86f11a3dd9029da69fb097b8a1abbd7.nii.gz

USM/sub-0050437/mri/lpba40_sub-0050437_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050437/mri/lpba40_sub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/m0wp1sub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/m0wp2sub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/m0wp3sub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/mori_sub-0050437_T1w.csv

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USM/sub-0050437/mri/mori_sub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/mwp1sub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/mwp2sub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/mwp3sub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/neuromorphometrics_sub-0050437_T1w.csv

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USM/sub-0050437/mri/neuromorphometrics_sub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/p0sub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/p1sub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/p2sub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/p3sub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/rp1sub-0050437_T1w_affine.nii.gz

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USM/sub-0050437/mri/rp2sub-0050437_T1w_affine.nii.gz

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USM/sub-0050437/mri/rp3sub-0050437_T1w_affine.nii.gz

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USM/sub-0050437/mri/t_sub-0050437_T1w_affine_reorient.mat

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USM/sub-0050437/mri/t_sub-0050437_T1w_rigid_reorient.mat

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USM/sub-0050437/mri/thalamus_sub-0050437_T1w.csv

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USM/sub-0050437/mri/thalamus_sub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/wj_sub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/wmisub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/wmsub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/wp0sub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/wp1sub-0050437_T1w.nii.gz

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USM/sub-0050437/mri/wp2sub-0050437_T1w.nii.gz

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