[DATALAD RUNCMD] Compute SBL/sub-0051561

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/SBL/sub-0051561/anat/sub-0051561_T1w.nii.gz"
 ],
 "outputs": [
  "SBL/sub-0051561"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SBL/sub-0051561/label/catROI_sub-0051561_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/KQ/QQ/MD5E-s61423--8ae3a2cca6b6276ee36a710ef4e0c81a.mat/MD5E-s61423--8ae3a2cca6b6276ee36a710ef4e0c81a.mat

SBL/sub-0051561/label/catROI_sub-0051561_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/40/MD5E-s188974--067f62aaad1d883a4e3590fab26efbb2.xml/MD5E-s188974--067f62aaad1d883a4e3590fab26efbb2.xml

SBL/sub-0051561/label/catROIs_sub-0051561_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pW/vv/MD5E-s120089--ba90b0e91db0e6a3fa56e0be56883ded.mat/MD5E-s120089--ba90b0e91db0e6a3fa56e0be56883ded.mat

SBL/sub-0051561/label/catROIs_sub-0051561_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/3z/Qk/MD5E-s332123--c4fcdb85008c0170fce9dee2e42cb8d7.xml/MD5E-s332123--c4fcdb85008c0170fce9dee2e42cb8d7.xml

SBL/sub-0051561/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051561_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SBL/sub-0051561/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w1/vM/MD5E-s206279--2da355e922a537b8c0aa117578384555.nii.gz/MD5E-s206279--2da355e922a537b8c0aa117578384555.nii.gz

SBL/sub-0051561/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051561_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SBL/sub-0051561/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xz/1P/MD5E-s231812--2c070378ab73e6e2066f843c36123592.nii.gz/MD5E-s231812--2c070378ab73e6e2066f843c36123592.nii.gz

SBL/sub-0051561/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051561_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SBL/sub-0051561/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J8/XW/MD5E-s290798--6ac8c395cd1928365a0906a43540d5cf.nii.gz/MD5E-s290798--6ac8c395cd1928365a0906a43540d5cf.nii.gz

SBL/sub-0051561/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051561_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SBL/sub-0051561/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fG/GK/MD5E-s324195--8bec1b79f91cde7ff6fa818195effb5a.nii.gz/MD5E-s324195--8bec1b79f91cde7ff6fa818195effb5a.nii.gz

SBL/sub-0051561/mri/Tian_Subcortex_S2_7T_sub-0051561_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SBL/sub-0051561/mri/Tian_Subcortex_S2_7T_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4G/26/MD5E-s26554--53e2f5917d8f8260970d0a29effb3926.nii.gz/MD5E-s26554--53e2f5917d8f8260970d0a29effb3926.nii.gz

SBL/sub-0051561/mri/aal3_sub-0051561_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SBL/sub-0051561/mri/aal3_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/FX/j4/MD5E-s232396--bcc85b89a3a434cbf8db03eb7ed64bf5.nii.gz/MD5E-s232396--bcc85b89a3a434cbf8db03eb7ed64bf5.nii.gz

SBL/sub-0051561/mri/anatomy3_sub-0051561_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SBL/sub-0051561/mri/anatomy3_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0X/9m/MD5E-s164660--047e274d1b5f80645c8e0a640fa6f595.nii.gz/MD5E-s164660--047e274d1b5f80645c8e0a640fa6f595.nii.gz

SBL/sub-0051561/mri/anon_misub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/66/1J/MD5E-s5527324--b14041f0f9fdf8e3ba66b861787f10e7.nii.gz/MD5E-s5527324--b14041f0f9fdf8e3ba66b861787f10e7.nii.gz

SBL/sub-0051561/mri/anon_msub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p7/Q2/MD5E-s11044433--bec031cc0d2da36fa6661f5b9eb6a6ff.nii.gz/MD5E-s11044433--bec031cc0d2da36fa6661f5b9eb6a6ff.nii.gz

SBL/sub-0051561/mri/cat_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V5/Jf/MD5E-s135005--5b4998420a4ff2f67320d63861ebbeb4.nii.gz/MD5E-s135005--5b4998420a4ff2f67320d63861ebbeb4.nii.gz

SBL/sub-0051561/mri/cobra_sub-0051561_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SBL/sub-0051561/mri/cobra_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XV/9J/MD5E-s58716--914b34fab5a279340f8c38edddac4ca9.nii.gz/MD5E-s58716--914b34fab5a279340f8c38edddac4ca9.nii.gz

SBL/sub-0051561/mri/hammers_sub-0051561_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SBL/sub-0051561/mri/hammers_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wp/8w/MD5E-s183109--fce3c549c46423e04b1bc9c696ed79ee.nii.gz/MD5E-s183109--fce3c549c46423e04b1bc9c696ed79ee.nii.gz

SBL/sub-0051561/mri/ibsr_sub-0051561_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SBL/sub-0051561/mri/ibsr_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5P/KW/MD5E-s191656--afba5b6f688517ca54efcfb35ce5e586.nii.gz/MD5E-s191656--afba5b6f688517ca54efcfb35ce5e586.nii.gz

SBL/sub-0051561/mri/it_sub-0051561_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/1X/vg/MD5E-s282--61686260e40448c952ff1aa613b45366.mat/MD5E-s282--61686260e40448c952ff1aa613b45366.mat

SBL/sub-0051561/mri/it_sub-0051561_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/XK/9w/MD5E-s281--650a152a580c3ab792bced6d117c0ccf.mat/MD5E-s281--650a152a580c3ab792bced6d117c0ccf.mat

SBL/sub-0051561/mri/iy_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M3/PG/MD5E-s54054149--5c180e3d07290ac672e73f9b00d4fcfa.nii.gz/MD5E-s54054149--5c180e3d07290ac672e73f9b00d4fcfa.nii.gz

SBL/sub-0051561/mri/julichbrain_sub-0051561_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SBL/sub-0051561/mri/julichbrain_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fv/zf/MD5E-s245558--3cbd84a03ff9af72279c1fbfed8e8bf5.nii.gz/MD5E-s245558--3cbd84a03ff9af72279c1fbfed8e8bf5.nii.gz

SBL/sub-0051561/mri/lpba40_sub-0051561_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SBL/sub-0051561/mri/lpba40_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k6/Q9/MD5E-s180358--b7c65be67673ca4e10f8fd3050c9daea.nii.gz/MD5E-s180358--b7c65be67673ca4e10f8fd3050c9daea.nii.gz

SBL/sub-0051561/mri/m0wp1sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gq/p0/MD5E-s2587536--d486110630a40ca3153f0f3076c9d262.nii.gz/MD5E-s2587536--d486110630a40ca3153f0f3076c9d262.nii.gz

SBL/sub-0051561/mri/m0wp2sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vP/fx/MD5E-s2423974--401d909b9a33daec6d4399089b79ae20.nii.gz/MD5E-s2423974--401d909b9a33daec6d4399089b79ae20.nii.gz

SBL/sub-0051561/mri/m0wp3sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mF/JV/MD5E-s2589677--f8e56621acc6ce1bbc2c1b8c78c275ca.nii.gz/MD5E-s2589677--f8e56621acc6ce1bbc2c1b8c78c275ca.nii.gz

SBL/sub-0051561/mri/mori_sub-0051561_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SBL/sub-0051561/mri/mori_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pm/Fp/MD5E-s210509--1b4fd45a471ccde43551eaa9cc94eab8.nii.gz/MD5E-s210509--1b4fd45a471ccde43551eaa9cc94eab8.nii.gz

SBL/sub-0051561/mri/mwp1sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/31/6j/MD5E-s2588086--d1a32988e0d27accc966e0644b243875.nii.gz/MD5E-s2588086--d1a32988e0d27accc966e0644b243875.nii.gz

SBL/sub-0051561/mri/mwp2sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2f/gj/MD5E-s2422416--306a582b59ff9736aace69cdd7b73f31.nii.gz/MD5E-s2422416--306a582b59ff9736aace69cdd7b73f31.nii.gz

SBL/sub-0051561/mri/mwp3sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V5/xk/MD5E-s2589170--b013272a4b5a6deb177ba1e21aa90d55.nii.gz/MD5E-s2589170--b013272a4b5a6deb177ba1e21aa90d55.nii.gz

SBL/sub-0051561/mri/neuromorphometrics_sub-0051561_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SBL/sub-0051561/mri/neuromorphometrics_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gk/Kw/MD5E-s245011--f63249f35e3085d57ab05630515f16c5.nii.gz/MD5E-s245011--f63249f35e3085d57ab05630515f16c5.nii.gz

SBL/sub-0051561/mri/p0sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JP/9x/MD5E-s796634--82376cfdf2e5f7f8f7e99f59d4ac2172.nii.gz/MD5E-s796634--82376cfdf2e5f7f8f7e99f59d4ac2172.nii.gz

SBL/sub-0051561/mri/p1sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3v/q9/MD5E-s840442--38ed37f3566c073905ad07405bc313ce.nii.gz/MD5E-s840442--38ed37f3566c073905ad07405bc313ce.nii.gz

SBL/sub-0051561/mri/p2sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/z2/68/MD5E-s579393--ac5c601a84f5950ddf828303a607cf03.nii.gz/MD5E-s579393--ac5c601a84f5950ddf828303a607cf03.nii.gz

SBL/sub-0051561/mri/p3sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mz/M3/MD5E-s478123--325973298b0e59e6aff58a38ff0bde9e.nii.gz/MD5E-s478123--325973298b0e59e6aff58a38ff0bde9e.nii.gz

SBL/sub-0051561/mri/rp1sub-0051561_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gQ/6z/MD5E-s459901--e4bc73baefd121108aecbf68eb2fc323.nii.gz/MD5E-s459901--e4bc73baefd121108aecbf68eb2fc323.nii.gz

SBL/sub-0051561/mri/rp2sub-0051561_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g0/X2/MD5E-s341868--4824f235aa633c0acd48545d7516e17b.nii.gz/MD5E-s341868--4824f235aa633c0acd48545d7516e17b.nii.gz

SBL/sub-0051561/mri/rp3sub-0051561_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zx/XW/MD5E-s310877--fcd96b2e617530f1ba1d2350163114ac.nii.gz/MD5E-s310877--fcd96b2e617530f1ba1d2350163114ac.nii.gz

SBL/sub-0051561/mri/t_sub-0051561_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wx/4j/MD5E-s282--1d00af4b63f037d1486d50c136ff6a5c.mat/MD5E-s282--1d00af4b63f037d1486d50c136ff6a5c.mat

SBL/sub-0051561/mri/t_sub-0051561_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/vq/9q/MD5E-s283--3d13edde3c540771ac9716cf2d9dc6ed.mat/MD5E-s283--3d13edde3c540771ac9716cf2d9dc6ed.mat

SBL/sub-0051561/mri/thalamus_sub-0051561_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SBL/sub-0051561/mri/thalamus_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051561/mri/wj_sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k4/QK/MD5E-s5561916--736096c921b439fbc859f4747602b7cd.nii.gz/MD5E-s5561916--736096c921b439fbc859f4747602b7cd.nii.gz

SBL/sub-0051561/mri/wmisub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051561/mri/wmsub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051561/mri/wp0sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
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SBL/sub-0051561/mri/wp1sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mw/K3/MD5E-s581096--ffc983143abca18d022648929be55463.nii.gz/MD5E-s581096--ffc983143abca18d022648929be55463.nii.gz

SBL/sub-0051561/mri/wp2sub-0051561_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p3/pQ/MD5E-s490172--2f099b81f55d065a4751ef535ba9aad1.nii.gz/MD5E-s490172--2f099b81f55d065a4751ef535ba9aad1.nii.gz

SBL/sub-0051561/mri/wp3sub-0051561_T1w.nii.gz

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