[DATALAD RUNCMD] Compute Leuven_2/sub-0050752

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_2/sub-0050752/anat/sub-0050752_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_2/sub-0050752"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_2/sub-0050752/label/catROI_sub-0050752_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pJ/K0/MD5E-s61367--5b76eb24901dde2767ff1b0551369d27.mat/MD5E-s61367--5b76eb24901dde2767ff1b0551369d27.mat

Leuven_2/sub-0050752/label/catROI_sub-0050752_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/gZ/5j/MD5E-s188983--5df0be8801517bbc0d1b495087db63c3.xml/MD5E-s188983--5df0be8801517bbc0d1b495087db63c3.xml

Leuven_2/sub-0050752/label/catROIs_sub-0050752_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fK/1X/MD5E-s120064--28689335a6e67059ea26dabdd18054e5.mat/MD5E-s120064--28689335a6e67059ea26dabdd18054e5.mat

Leuven_2/sub-0050752/label/catROIs_sub-0050752_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/w4/ZW/MD5E-s332123--6acfa3acf871e1b6fa3971f690abb6d6.xml/MD5E-s332123--6acfa3acf871e1b6fa3971f690abb6d6.xml

Leuven_2/sub-0050752/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050752_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_2/sub-0050752/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050752_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z4/7g/MD5E-s175555--69d82e4b950b22d2b014451a0c39fcc8.nii.gz/MD5E-s175555--69d82e4b950b22d2b014451a0c39fcc8.nii.gz

Leuven_2/sub-0050752/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050752_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_2/sub-0050752/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050752_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mp/g4/MD5E-s195641--a58effb7edb27465a3783fbe71409bb2.nii.gz/MD5E-s195641--a58effb7edb27465a3783fbe71409bb2.nii.gz

Leuven_2/sub-0050752/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050752_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_2/sub-0050752/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050752_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/fz/MD5E-s250650--6a2a9082263f5a80aa247a4205a3b154.nii.gz/MD5E-s250650--6a2a9082263f5a80aa247a4205a3b154.nii.gz

Leuven_2/sub-0050752/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050752_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_2/sub-0050752/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050752_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jJ/WW/MD5E-s279195--6d6865d3b55f0f2b0d509f3406fcf3fa.nii.gz/MD5E-s279195--6d6865d3b55f0f2b0d509f3406fcf3fa.nii.gz

Leuven_2/sub-0050752/mri/Tian_Subcortex_S2_7T_sub-0050752_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_2/sub-0050752/mri/Tian_Subcortex_S2_7T_sub-0050752_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GQ/6J/MD5E-s25914--20654df99c514dc69b901e1ed77cb2b6.nii.gz/MD5E-s25914--20654df99c514dc69b901e1ed77cb2b6.nii.gz

Leuven_2/sub-0050752/mri/aal3_sub-0050752_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_2/sub-0050752/mri/aal3_sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/anatomy3_sub-0050752_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_2/sub-0050752/mri/anatomy3_sub-0050752_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050752/mri/anon_misub-0050752_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050752/mri/anon_msub-0050752_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M6/Kv/MD5E-s12021391--e80f5b023299a97964d738f10ea0bf5a.nii.gz/MD5E-s12021391--e80f5b023299a97964d738f10ea0bf5a.nii.gz

Leuven_2/sub-0050752/mri/cat_sub-0050752_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k4/5m/MD5E-s102896--35d8b6591d5b402ededb8d91c04ed813.nii.gz/MD5E-s102896--35d8b6591d5b402ededb8d91c04ed813.nii.gz

Leuven_2/sub-0050752/mri/cobra_sub-0050752_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_2/sub-0050752/mri/cobra_sub-0050752_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3W/Kx/MD5E-s49678--4bffc8d44b5fe94ef2506a708d9ef9ef.nii.gz/MD5E-s49678--4bffc8d44b5fe94ef2506a708d9ef9ef.nii.gz

Leuven_2/sub-0050752/mri/hammers_sub-0050752_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_2/sub-0050752/mri/hammers_sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/ibsr_sub-0050752_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_2/sub-0050752/mri/ibsr_sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/it_sub-0050752_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/x6/MZ/MD5E-s281--775c1099b9ee3923bc1d4855c0776ea9.mat/MD5E-s281--775c1099b9ee3923bc1d4855c0776ea9.mat

Leuven_2/sub-0050752/mri/it_sub-0050752_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/w5/fF/MD5E-s282--8c8b3f8b659389b38d78ff628e488e73.mat/MD5E-s282--8c8b3f8b659389b38d78ff628e488e73.mat

Leuven_2/sub-0050752/mri/iy_sub-0050752_T1w.nii.gz

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+../../../.git/annex/objects/J9/pX/MD5E-s40854648--56131780c18dd167e058424beec322cf.nii.gz/MD5E-s40854648--56131780c18dd167e058424beec322cf.nii.gz

Leuven_2/sub-0050752/mri/julichbrain_sub-0050752_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Leuven_2/sub-0050752/mri/julichbrain_sub-0050752_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pw/04/MD5E-s208282--1b7b985bda8261d47a96838a43f74a84.nii.gz/MD5E-s208282--1b7b985bda8261d47a96838a43f74a84.nii.gz

Leuven_2/sub-0050752/mri/lpba40_sub-0050752_T1w.csv

@@ -0,0 +1 @@
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Leuven_2/sub-0050752/mri/lpba40_sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/m0wp1sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/m0wp2sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/m0wp3sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/mori_sub-0050752_T1w.csv

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Leuven_2/sub-0050752/mri/mori_sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/mwp1sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/mwp2sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/mwp3sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/neuromorphometrics_sub-0050752_T1w.csv

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Leuven_2/sub-0050752/mri/neuromorphometrics_sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/p0sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/p1sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/p2sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/p3sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/rp1sub-0050752_T1w_affine.nii.gz

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Leuven_2/sub-0050752/mri/rp2sub-0050752_T1w_affine.nii.gz

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Leuven_2/sub-0050752/mri/rp3sub-0050752_T1w_affine.nii.gz

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Leuven_2/sub-0050752/mri/t_sub-0050752_T1w_affine_reorient.mat

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Leuven_2/sub-0050752/mri/t_sub-0050752_T1w_rigid_reorient.mat

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Leuven_2/sub-0050752/mri/thalamus_sub-0050752_T1w.csv

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Leuven_2/sub-0050752/mri/thalamus_sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/wj_sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/wmisub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/wmsub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/wp0sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/wp1sub-0050752_T1w.nii.gz

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Leuven_2/sub-0050752/mri/wp2sub-0050752_T1w.nii.gz

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