[DATALAD RUNCMD] Compute USM/sub-0050507

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050507/anat/sub-0050507_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050507"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050507/label/catROI_sub-0050507_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pk/vm/MD5E-s61386--d208d0c5bceeba57daab7ffefe52408a.mat/MD5E-s61386--d208d0c5bceeba57daab7ffefe52408a.mat

USM/sub-0050507/label/catROI_sub-0050507_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/kv/Pm/MD5E-s189406--bcd84b3c942f2314b426eee49d3ddc45.xml/MD5E-s189406--bcd84b3c942f2314b426eee49d3ddc45.xml

USM/sub-0050507/label/catROIs_sub-0050507_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/3k/3F/MD5E-s120141--ae9767e1cca4e241c894e0a54aa57799.mat/MD5E-s120141--ae9767e1cca4e241c894e0a54aa57799.mat

USM/sub-0050507/label/catROIs_sub-0050507_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/2P/2F/MD5E-s332147--e724d27c90710e91a9eab71e401721ef.xml/MD5E-s332147--e724d27c90710e91a9eab71e401721ef.xml

USM/sub-0050507/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050507_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050507/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zz/9Q/MD5E-s363966--b9c711dfb8f5f282f8f2895faee2ab15.nii.gz/MD5E-s363966--b9c711dfb8f5f282f8f2895faee2ab15.nii.gz

USM/sub-0050507/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050507_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050507/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q3/2X/MD5E-s404054--c79d692b6646f11a36887fe5f02b2da0.nii.gz/MD5E-s404054--c79d692b6646f11a36887fe5f02b2da0.nii.gz

USM/sub-0050507/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050507_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050507/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G6/F2/MD5E-s584140--ab8cf9760df8a94da6d8685a9048ad4c.nii.gz/MD5E-s584140--ab8cf9760df8a94da6d8685a9048ad4c.nii.gz

USM/sub-0050507/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050507_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050507/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/20/04/MD5E-s640285--c4224ce84db87ca6c02b355fadf60d0a.nii.gz/MD5E-s640285--c4224ce84db87ca6c02b355fadf60d0a.nii.gz

USM/sub-0050507/mri/Tian_Subcortex_S2_7T_sub-0050507_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050507/mri/Tian_Subcortex_S2_7T_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/2k/gv/MD5E-s68055--939903b171d26fe287c098d7bdc9e254.nii.gz/MD5E-s68055--939903b171d26fe287c098d7bdc9e254.nii.gz

USM/sub-0050507/mri/aal3_sub-0050507_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050507/mri/aal3_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kz/Mf/MD5E-s413153--715639fddc29b35df2cdeb07cfb0390e.nii.gz/MD5E-s413153--715639fddc29b35df2cdeb07cfb0390e.nii.gz

USM/sub-0050507/mri/anatomy3_sub-0050507_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050507/mri/anatomy3_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/q0/M8/MD5E-s307905--275dca9e78bf9130b3c39cba074efc5d.nii.gz/MD5E-s307905--275dca9e78bf9130b3c39cba074efc5d.nii.gz

USM/sub-0050507/mri/anon_misub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pm/0q/MD5E-s15413133--e3d242928817437398664a9cd8eae167.nii.gz/MD5E-s15413133--e3d242928817437398664a9cd8eae167.nii.gz

USM/sub-0050507/mri/anon_msub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m7/qG/MD5E-s39513273--af2d1f4b4f6ae5d5e01ce3448010378f.nii.gz/MD5E-s39513273--af2d1f4b4f6ae5d5e01ce3448010378f.nii.gz

USM/sub-0050507/mri/cat_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G4/2q/MD5E-s230569--867b0bfe552743fecba49a3e28b6326d.nii.gz/MD5E-s230569--867b0bfe552743fecba49a3e28b6326d.nii.gz

USM/sub-0050507/mri/cobra_sub-0050507_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050507/mri/cobra_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p1/5G/MD5E-s121286--f1e2ca36646e1a2f8623740af97fa954.nii.gz/MD5E-s121286--f1e2ca36646e1a2f8623740af97fa954.nii.gz

USM/sub-0050507/mri/hammers_sub-0050507_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050507/mri/hammers_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mq/WX/MD5E-s334410--4893dd34229252ab5be4f234106c80ce.nii.gz/MD5E-s334410--4893dd34229252ab5be4f234106c80ce.nii.gz

USM/sub-0050507/mri/ibsr_sub-0050507_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050507/mri/ibsr_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qK/xw/MD5E-s353666--3f5db63ffa308a33084fe25295fca671.nii.gz/MD5E-s353666--3f5db63ffa308a33084fe25295fca671.nii.gz

USM/sub-0050507/mri/it_sub-0050507_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/0X/jk/MD5E-s284--b42fb281e176acd259a107d988822821.mat/MD5E-s284--b42fb281e176acd259a107d988822821.mat

USM/sub-0050507/mri/it_sub-0050507_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/zP/qq/MD5E-s283--9d0d538083f8156ab0c25791335b9a45.mat/MD5E-s283--9d0d538083f8156ab0c25791335b9a45.mat

USM/sub-0050507/mri/iy_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0X/X5/MD5E-s143547170--fcce4d1689eeebf040b2fa128c84ca91.nii.gz/MD5E-s143547170--fcce4d1689eeebf040b2fa128c84ca91.nii.gz

USM/sub-0050507/mri/julichbrain_sub-0050507_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050507/mri/julichbrain_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p2/Z7/MD5E-s433479--a86e7091e3bf7fcbc2d8f277684f45f3.nii.gz/MD5E-s433479--a86e7091e3bf7fcbc2d8f277684f45f3.nii.gz

USM/sub-0050507/mri/lpba40_sub-0050507_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050507/mri/lpba40_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/36/j9/MD5E-s328585--3d8ff99242cdb8dbb85714720f1c2642.nii.gz/MD5E-s328585--3d8ff99242cdb8dbb85714720f1c2642.nii.gz

USM/sub-0050507/mri/m0wp1sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qQ/Kq/MD5E-s2563540--dcb02fd17327e4820d7dba459ce602e2.nii.gz/MD5E-s2563540--dcb02fd17327e4820d7dba459ce602e2.nii.gz

USM/sub-0050507/mri/m0wp2sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/W1/Pm/MD5E-s2250749--e2b40c5b7ce14f6a66d2734420bd1e41.nii.gz/MD5E-s2250749--e2b40c5b7ce14f6a66d2734420bd1e41.nii.gz

USM/sub-0050507/mri/m0wp3sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zk/km/MD5E-s2514592--657e4bef29a2ce6522442e739f74e157.nii.gz/MD5E-s2514592--657e4bef29a2ce6522442e739f74e157.nii.gz

USM/sub-0050507/mri/mori_sub-0050507_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

USM/sub-0050507/mri/mori_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kx/6F/MD5E-s380873--0445595bc98f70c2e5f6a66a8217a0aa.nii.gz/MD5E-s380873--0445595bc98f70c2e5f6a66a8217a0aa.nii.gz

USM/sub-0050507/mri/mwp1sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5v/JV/MD5E-s2572319--77907b6a250b6cef114e352338d1bf2b.nii.gz/MD5E-s2572319--77907b6a250b6cef114e352338d1bf2b.nii.gz

USM/sub-0050507/mri/mwp2sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zm/gQ/MD5E-s2254033--140bf6996432a1d9b0c3d1282464c5ee.nii.gz/MD5E-s2254033--140bf6996432a1d9b0c3d1282464c5ee.nii.gz

USM/sub-0050507/mri/mwp3sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1G/89/MD5E-s2514295--13192a1507c5e69ae1af280aa3d5e723.nii.gz/MD5E-s2514295--13192a1507c5e69ae1af280aa3d5e723.nii.gz

USM/sub-0050507/mri/neuromorphometrics_sub-0050507_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

USM/sub-0050507/mri/neuromorphometrics_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1w/FW/MD5E-s446124--f815850e84615c0eaa8f8b5a29330749.nii.gz/MD5E-s446124--f815850e84615c0eaa8f8b5a29330749.nii.gz

USM/sub-0050507/mri/p0sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K5/13/MD5E-s3298074--fe16a6eac8dfc86312bc09fbfa52928a.nii.gz/MD5E-s3298074--fe16a6eac8dfc86312bc09fbfa52928a.nii.gz

USM/sub-0050507/mri/p1sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0M/k1/MD5E-s3147560--46d4171565c54216e461a6b271cf3f28.nii.gz/MD5E-s3147560--46d4171565c54216e461a6b271cf3f28.nii.gz

USM/sub-0050507/mri/p2sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3M/JG/MD5E-s2119449--fa8f3cc55127e18dadd1c41ba65fbf62.nii.gz/MD5E-s2119449--fa8f3cc55127e18dadd1c41ba65fbf62.nii.gz

USM/sub-0050507/mri/p3sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1Z/Pp/MD5E-s2184147--328c3379c6d7d44ee0e27f5d93dc9ee9.nii.gz/MD5E-s2184147--328c3379c6d7d44ee0e27f5d93dc9ee9.nii.gz

USM/sub-0050507/mri/rp1sub-0050507_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6G/MM/MD5E-s399871--283c554dab68b82ecc0476bb8d3500a4.nii.gz/MD5E-s399871--283c554dab68b82ecc0476bb8d3500a4.nii.gz

USM/sub-0050507/mri/rp2sub-0050507_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gZ/Fz/MD5E-s259842--4e78fd67b5a25782d63b7ad45d49c2a6.nii.gz/MD5E-s259842--4e78fd67b5a25782d63b7ad45d49c2a6.nii.gz

USM/sub-0050507/mri/rp3sub-0050507_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/40/zp/MD5E-s266524--cdf424c57eb671228fde1a2c6ba7814b.nii.gz/MD5E-s266524--cdf424c57eb671228fde1a2c6ba7814b.nii.gz

USM/sub-0050507/mri/t_sub-0050507_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/qM/ZQ/MD5E-s284--9c5dc6d05465f94499d344d85b450137.mat/MD5E-s284--9c5dc6d05465f94499d344d85b450137.mat

USM/sub-0050507/mri/t_sub-0050507_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/9v/ff/MD5E-s283--642abd6f9146c7573617b10bd452c038.mat/MD5E-s283--642abd6f9146c7573617b10bd452c038.mat

USM/sub-0050507/mri/thalamus_sub-0050507_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050507/mri/thalamus_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050507/mri/wj_sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050507/mri/wmisub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050507/mri/wmsub-0050507_T1w.nii.gz

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USM/sub-0050507/mri/wp0sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050507/mri/wp1sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050507/mri/wp2sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050507/mri/wp3sub-0050507_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050507/mri/y_sub-0050507_T1w.nii.gz

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