[DATALAD RUNCMD] Compute Leuven_2/sub-0050722

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_2/sub-0050722/anat/sub-0050722_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_2/sub-0050722"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_2/sub-0050722/label/catROI_sub-0050722_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/1J/5f/MD5E-s61369--42a251b80c4d1f15f5c74ca8025f760a.mat/MD5E-s61369--42a251b80c4d1f15f5c74ca8025f760a.mat

Leuven_2/sub-0050722/label/catROI_sub-0050722_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/47/9z/MD5E-s189070--9502d8b0b19313be9270bfd54996168b.xml/MD5E-s189070--9502d8b0b19313be9270bfd54996168b.xml

Leuven_2/sub-0050722/label/catROIs_sub-0050722_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8v/zX/MD5E-s120127--7aa810228e9d6eb5d99d0607cddd7bf2.mat/MD5E-s120127--7aa810228e9d6eb5d99d0607cddd7bf2.mat

Leuven_2/sub-0050722/label/catROIs_sub-0050722_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/mf/q7/MD5E-s332122--449e1d7d97e069059b9482632cf440a4.xml/MD5E-s332122--449e1d7d97e069059b9482632cf440a4.xml

Leuven_2/sub-0050722/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050722_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_2/sub-0050722/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050722_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KQ/F1/MD5E-s170254--c1884f0122497a88928ea24dae7c3a3b.nii.gz/MD5E-s170254--c1884f0122497a88928ea24dae7c3a3b.nii.gz

Leuven_2/sub-0050722/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050722_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_2/sub-0050722/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050722_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/03/4G/MD5E-s190667--5481be4d5edce539ff3b5cd21ed0c820.nii.gz/MD5E-s190667--5481be4d5edce539ff3b5cd21ed0c820.nii.gz

Leuven_2/sub-0050722/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050722_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_2/sub-0050722/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050722_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mv/zX/MD5E-s243739--20139e34ea0212ef2175c4fc7077946b.nii.gz/MD5E-s243739--20139e34ea0212ef2175c4fc7077946b.nii.gz

Leuven_2/sub-0050722/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050722_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_2/sub-0050722/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050722_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/0P/kF/MD5E-s271220--97b742321473ec3a8e81a686dc5591b5.nii.gz/MD5E-s271220--97b742321473ec3a8e81a686dc5591b5.nii.gz

Leuven_2/sub-0050722/mri/Tian_Subcortex_S2_7T_sub-0050722_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_2/sub-0050722/mri/Tian_Subcortex_S2_7T_sub-0050722_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gK/g9/MD5E-s25571--529cae86bdcb98d9c27043a9ad23b47e.nii.gz/MD5E-s25571--529cae86bdcb98d9c27043a9ad23b47e.nii.gz

Leuven_2/sub-0050722/mri/aal3_sub-0050722_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_2/sub-0050722/mri/aal3_sub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/anatomy3_sub-0050722_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_2/sub-0050722/mri/anatomy3_sub-0050722_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050722/mri/anon_misub-0050722_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wp/2V/MD5E-s5211548--61cfbce63a3885f11f913ba0a2989c41.nii.gz/MD5E-s5211548--61cfbce63a3885f11f913ba0a2989c41.nii.gz

Leuven_2/sub-0050722/mri/anon_msub-0050722_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GZ/K8/MD5E-s11794501--1c525d3c613ccacb1fdb54b0c5a7132d.nii.gz/MD5E-s11794501--1c525d3c613ccacb1fdb54b0c5a7132d.nii.gz

Leuven_2/sub-0050722/mri/cat_sub-0050722_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1Q/70/MD5E-s102548--7a2966d719a33fd83de3ec94cebf0974.nii.gz/MD5E-s102548--7a2966d719a33fd83de3ec94cebf0974.nii.gz

Leuven_2/sub-0050722/mri/cobra_sub-0050722_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_2/sub-0050722/mri/cobra_sub-0050722_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zf/7M/MD5E-s50614--d265920b34be730c6a8b6b9da42178b9.nii.gz/MD5E-s50614--d265920b34be730c6a8b6b9da42178b9.nii.gz

Leuven_2/sub-0050722/mri/hammers_sub-0050722_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_2/sub-0050722/mri/hammers_sub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/ibsr_sub-0050722_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_2/sub-0050722/mri/ibsr_sub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/it_sub-0050722_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/q8/Xq/MD5E-s282--ae5110af926125c292fae08498e47b8a.mat/MD5E-s282--ae5110af926125c292fae08498e47b8a.mat

Leuven_2/sub-0050722/mri/it_sub-0050722_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/j5/k1/MD5E-s282--bcbddc3e79f5e760e1aed249ce656027.mat/MD5E-s282--bcbddc3e79f5e760e1aed249ce656027.mat

Leuven_2/sub-0050722/mri/iy_sub-0050722_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/86/38/MD5E-s39711544--c3e2e194bbf3e395f5e6bfac120fd2f2.nii.gz/MD5E-s39711544--c3e2e194bbf3e395f5e6bfac120fd2f2.nii.gz

Leuven_2/sub-0050722/mri/julichbrain_sub-0050722_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Leuven_2/sub-0050722/mri/julichbrain_sub-0050722_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f6/gz/MD5E-s203081--8b6d0cdb4f36ea238a42f0c3be0197bd.nii.gz/MD5E-s203081--8b6d0cdb4f36ea238a42f0c3be0197bd.nii.gz

Leuven_2/sub-0050722/mri/lpba40_sub-0050722_T1w.csv

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Leuven_2/sub-0050722/mri/lpba40_sub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/m0wp1sub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/m0wp2sub-0050722_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050722/mri/m0wp3sub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/mori_sub-0050722_T1w.csv

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Leuven_2/sub-0050722/mri/mori_sub-0050722_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050722/mri/mwp1sub-0050722_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_2/sub-0050722/mri/mwp2sub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/mwp3sub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/neuromorphometrics_sub-0050722_T1w.csv

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Leuven_2/sub-0050722/mri/neuromorphometrics_sub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/p0sub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/p1sub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/p2sub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/p3sub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/rp1sub-0050722_T1w_affine.nii.gz

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Leuven_2/sub-0050722/mri/rp2sub-0050722_T1w_affine.nii.gz

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Leuven_2/sub-0050722/mri/rp3sub-0050722_T1w_affine.nii.gz

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Leuven_2/sub-0050722/mri/t_sub-0050722_T1w_affine_reorient.mat

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Leuven_2/sub-0050722/mri/t_sub-0050722_T1w_rigid_reorient.mat

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Leuven_2/sub-0050722/mri/thalamus_sub-0050722_T1w.csv

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Leuven_2/sub-0050722/mri/thalamus_sub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/wj_sub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/wmisub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/wmsub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/wp0sub-0050722_T1w.nii.gz

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Leuven_2/sub-0050722/mri/wp1sub-0050722_T1w.nii.gz

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