[DATALAD RUNCMD] Compute USM/sub-0050494

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/USM/sub-0050494/anat/sub-0050494_T1w.nii.gz"
 ],
 "outputs": [
  "USM/sub-0050494"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

USM/sub-0050494/label/catROI_sub-0050494_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xm/qk/MD5E-s61404--1b6364daeaa2654783dff1d477365887.mat/MD5E-s61404--1b6364daeaa2654783dff1d477365887.mat

USM/sub-0050494/label/catROI_sub-0050494_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/qm/71/MD5E-s189035--346d0bed75e6cedc0ae33c057648c66a.xml/MD5E-s189035--346d0bed75e6cedc0ae33c057648c66a.xml

USM/sub-0050494/label/catROIs_sub-0050494_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/wv/Vq/MD5E-s119937--d84e77878120baca7380defae067424c.mat/MD5E-s119937--d84e77878120baca7380defae067424c.mat

USM/sub-0050494/label/catROIs_sub-0050494_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/XZ/82/MD5E-s332126--3a130f85bcd389536f8de06cbfc4707f.xml/MD5E-s332126--3a130f85bcd389536f8de06cbfc4707f.xml

USM/sub-0050494/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050494_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

USM/sub-0050494/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050494_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/kP/zM/MD5E-s400783--2fe5d624495104e0fb6484968a6ca370.nii.gz/MD5E-s400783--2fe5d624495104e0fb6484968a6ca370.nii.gz

USM/sub-0050494/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050494_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

USM/sub-0050494/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050494_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/M7/v7/MD5E-s445201--b71d5734123ad452e5265991ff340d76.nii.gz/MD5E-s445201--b71d5734123ad452e5265991ff340d76.nii.gz

USM/sub-0050494/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050494_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

USM/sub-0050494/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050494_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V1/q4/MD5E-s639436--20ca5c19a7c7e8a472ca869a74905050.nii.gz/MD5E-s639436--20ca5c19a7c7e8a472ca869a74905050.nii.gz

USM/sub-0050494/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050494_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

USM/sub-0050494/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050494_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G2/13/MD5E-s703293--f38a676bf0332f32aecfb8f17ebd042b.nii.gz/MD5E-s703293--f38a676bf0332f32aecfb8f17ebd042b.nii.gz

USM/sub-0050494/mri/Tian_Subcortex_S2_7T_sub-0050494_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

USM/sub-0050494/mri/Tian_Subcortex_S2_7T_sub-0050494_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vV/Xz/MD5E-s70327--5e706754e9b28b0a513362e43add5523.nii.gz/MD5E-s70327--5e706754e9b28b0a513362e43add5523.nii.gz

USM/sub-0050494/mri/aal3_sub-0050494_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

USM/sub-0050494/mri/aal3_sub-0050494_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6P/KX/MD5E-s450595--4abe2aa1007be9b2bf8cbfa0b110c3f8.nii.gz/MD5E-s450595--4abe2aa1007be9b2bf8cbfa0b110c3f8.nii.gz

USM/sub-0050494/mri/anatomy3_sub-0050494_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

USM/sub-0050494/mri/anatomy3_sub-0050494_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pq/J2/MD5E-s333101--c301663fabfbfdcec5e785682449833a.nii.gz/MD5E-s333101--c301663fabfbfdcec5e785682449833a.nii.gz

USM/sub-0050494/mri/anon_misub-0050494_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KX/6Z/MD5E-s20032432--d6de2dac56b5438d205e9a16c3652562.nii.gz/MD5E-s20032432--d6de2dac56b5438d205e9a16c3652562.nii.gz

USM/sub-0050494/mri/anon_msub-0050494_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/63/q0/MD5E-s41374991--23d83cb1f05011811affb6b954c8beb0.nii.gz/MD5E-s41374991--23d83cb1f05011811affb6b954c8beb0.nii.gz

USM/sub-0050494/mri/cat_sub-0050494_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gJ/JZ/MD5E-s252714--33bc10b97087fcd0c9fe42447c5e1b67.nii.gz/MD5E-s252714--33bc10b97087fcd0c9fe42447c5e1b67.nii.gz

USM/sub-0050494/mri/cobra_sub-0050494_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

USM/sub-0050494/mri/cobra_sub-0050494_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/83/Xx/MD5E-s124598--e1703a0dbcf896e067fc7d13c04ce1fd.nii.gz/MD5E-s124598--e1703a0dbcf896e067fc7d13c04ce1fd.nii.gz

USM/sub-0050494/mri/hammers_sub-0050494_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

USM/sub-0050494/mri/hammers_sub-0050494_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1Q/4m/MD5E-s360623--54cb8b8b07434140b4aa585cb485569f.nii.gz/MD5E-s360623--54cb8b8b07434140b4aa585cb485569f.nii.gz

USM/sub-0050494/mri/ibsr_sub-0050494_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

USM/sub-0050494/mri/ibsr_sub-0050494_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jX/1M/MD5E-s383357--03da1728adf62556e718bf8e6d7eec24.nii.gz/MD5E-s383357--03da1728adf62556e718bf8e6d7eec24.nii.gz

USM/sub-0050494/mri/it_sub-0050494_T1w_affine_reorient.mat

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+../../../.git/annex/objects/wq/MF/MD5E-s282--12ba7e5959de3d45019986e30cb481b6.mat/MD5E-s282--12ba7e5959de3d45019986e30cb481b6.mat

USM/sub-0050494/mri/it_sub-0050494_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/XM/MF/MD5E-s282--4eacdfa6d535ef470d8d1f6610901bb2.mat/MD5E-s282--4eacdfa6d535ef470d8d1f6610901bb2.mat

USM/sub-0050494/mri/iy_sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/julichbrain_sub-0050494_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

USM/sub-0050494/mri/julichbrain_sub-0050494_T1w.nii.gz

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+../../../.git/annex/objects/7Q/fJ/MD5E-s471409--220136000cf6990ed2ae6c331699d67e.nii.gz/MD5E-s471409--220136000cf6990ed2ae6c331699d67e.nii.gz

USM/sub-0050494/mri/lpba40_sub-0050494_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

USM/sub-0050494/mri/lpba40_sub-0050494_T1w.nii.gz

@@ -0,0 +1 @@
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USM/sub-0050494/mri/m0wp1sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/m0wp2sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/m0wp3sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/mori_sub-0050494_T1w.csv

@@ -0,0 +1 @@
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USM/sub-0050494/mri/mori_sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/mwp1sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/mwp2sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/mwp3sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/neuromorphometrics_sub-0050494_T1w.csv

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USM/sub-0050494/mri/neuromorphometrics_sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/p0sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/p1sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/p2sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/p3sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/rp1sub-0050494_T1w_affine.nii.gz

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USM/sub-0050494/mri/rp2sub-0050494_T1w_affine.nii.gz

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USM/sub-0050494/mri/rp3sub-0050494_T1w_affine.nii.gz

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USM/sub-0050494/mri/t_sub-0050494_T1w_affine_reorient.mat

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USM/sub-0050494/mri/t_sub-0050494_T1w_rigid_reorient.mat

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USM/sub-0050494/mri/thalamus_sub-0050494_T1w.csv

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USM/sub-0050494/mri/thalamus_sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/wj_sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/wmisub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/wmsub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/wp0sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/wp1sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/wp2sub-0050494_T1w.nii.gz

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USM/sub-0050494/mri/wp3sub-0050494_T1w.nii.gz

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