[DATALAD RUNCMD] Compute UM_1/sub-0050306

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050306/anat/sub-0050306_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050306"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050306/label/catROI_sub-0050306_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/wg/z8/MD5E-s61419--316b1d678e48484bdc1eb472062c802c.mat/MD5E-s61419--316b1d678e48484bdc1eb472062c802c.mat

UM_1/sub-0050306/label/catROI_sub-0050306_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/jG/Q6/MD5E-s188760--21a9613e65666ad47ac73cb14ed61606.xml/MD5E-s188760--21a9613e65666ad47ac73cb14ed61606.xml

UM_1/sub-0050306/label/catROIs_sub-0050306_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/2j/Vw/MD5E-s120326--4ed164a06f47f9ca8c441b778d239d7a.mat/MD5E-s120326--4ed164a06f47f9ca8c441b778d239d7a.mat

UM_1/sub-0050306/label/catROIs_sub-0050306_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/80/jz/MD5E-s332114--71c9d138531024ee479df9b1fa017d91.xml/MD5E-s332114--71c9d138531024ee479df9b1fa017d91.xml

UM_1/sub-0050306/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050306_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050306/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050306_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/G4/mJ/MD5E-s164834--c22cd3b29d998cf71046c8dccc2ee26d.nii.gz/MD5E-s164834--c22cd3b29d998cf71046c8dccc2ee26d.nii.gz

UM_1/sub-0050306/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050306_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050306/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050306_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vf/gP/MD5E-s186150--49b77cf0e9da26658eb4008f7540c28f.nii.gz/MD5E-s186150--49b77cf0e9da26658eb4008f7540c28f.nii.gz

UM_1/sub-0050306/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050306_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050306/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050306_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZG/jW/MD5E-s235083--07be383b9f8e181a02382273e29ab826.nii.gz/MD5E-s235083--07be383b9f8e181a02382273e29ab826.nii.gz

UM_1/sub-0050306/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050306_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050306/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050306_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/g5/7P/MD5E-s262415--acb99e9aacdabfb7c674d17d9e8c7956.nii.gz/MD5E-s262415--acb99e9aacdabfb7c674d17d9e8c7956.nii.gz

UM_1/sub-0050306/mri/Tian_Subcortex_S2_7T_sub-0050306_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050306/mri/Tian_Subcortex_S2_7T_sub-0050306_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Gk/wZ/MD5E-s21500--e9fe5f06786acdb67ea1d1079671b092.nii.gz/MD5E-s21500--e9fe5f06786acdb67ea1d1079671b092.nii.gz

UM_1/sub-0050306/mri/aal3_sub-0050306_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050306/mri/aal3_sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/anatomy3_sub-0050306_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050306/mri/anatomy3_sub-0050306_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QF/wP/MD5E-s134456--f46de33d1c51d62d898f5f0dbe35cee2.nii.gz/MD5E-s134456--f46de33d1c51d62d898f5f0dbe35cee2.nii.gz

UM_1/sub-0050306/mri/anon_misub-0050306_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050306/mri/anon_msub-0050306_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/81/mz/MD5E-s8518699--1c6a4c2bd403e02198589caa236cdb43.nii.gz/MD5E-s8518699--1c6a4c2bd403e02198589caa236cdb43.nii.gz

UM_1/sub-0050306/mri/cat_sub-0050306_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/87/6P/MD5E-s96968--cf1c6385f7e322445bb461e8d51f92b5.nii.gz/MD5E-s96968--cf1c6385f7e322445bb461e8d51f92b5.nii.gz

UM_1/sub-0050306/mri/cobra_sub-0050306_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050306/mri/cobra_sub-0050306_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050306/mri/hammers_sub-0050306_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050306/mri/hammers_sub-0050306_T1w.nii.gz

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+../../../.git/annex/objects/q3/XQ/MD5E-s143829--978f7b4169efd704b7923e918c82c769.nii.gz/MD5E-s143829--978f7b4169efd704b7923e918c82c769.nii.gz

UM_1/sub-0050306/mri/ibsr_sub-0050306_T1w.csv

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UM_1/sub-0050306/mri/ibsr_sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/it_sub-0050306_T1w_affine_reorient.mat

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UM_1/sub-0050306/mri/it_sub-0050306_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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UM_1/sub-0050306/mri/iy_sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/julichbrain_sub-0050306_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050306/mri/julichbrain_sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/lpba40_sub-0050306_T1w.csv

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UM_1/sub-0050306/mri/lpba40_sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/m0wp1sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/m0wp2sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/m0wp3sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/mori_sub-0050306_T1w.csv

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UM_1/sub-0050306/mri/mori_sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/mwp1sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/mwp2sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/mwp3sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/neuromorphometrics_sub-0050306_T1w.csv

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UM_1/sub-0050306/mri/neuromorphometrics_sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/p0sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/p1sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/p2sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/p3sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/rp1sub-0050306_T1w_affine.nii.gz

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UM_1/sub-0050306/mri/rp2sub-0050306_T1w_affine.nii.gz

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UM_1/sub-0050306/mri/rp3sub-0050306_T1w_affine.nii.gz

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UM_1/sub-0050306/mri/t_sub-0050306_T1w_affine_reorient.mat

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UM_1/sub-0050306/mri/t_sub-0050306_T1w_rigid_reorient.mat

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UM_1/sub-0050306/mri/thalamus_sub-0050306_T1w.csv

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UM_1/sub-0050306/mri/thalamus_sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/wj_sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/wmisub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/wmsub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/wp0sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/wp1sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/wp2sub-0050306_T1w.nii.gz

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UM_1/sub-0050306/mri/wp3sub-0050306_T1w.nii.gz

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