[DATALAD RUNCMD] Compute SDSU/sub-0050215

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/SDSU/sub-0050215/anat/sub-0050215_T1w.nii.gz"
 ],
 "outputs": [
  "SDSU/sub-0050215"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SDSU/sub-0050215/label/catROI_sub-0050215_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/jX/M9/MD5E-s57930--c12be4d3a60a54d4f60aef58b7718b45.mat/MD5E-s57930--c12be4d3a60a54d4f60aef58b7718b45.mat

SDSU/sub-0050215/label/catROI_sub-0050215_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/5M/z0/MD5E-s188918--e60fd7d9b222df742422e465a886fbf0.xml/MD5E-s188918--e60fd7d9b222df742422e465a886fbf0.xml

SDSU/sub-0050215/label/catROIs_sub-0050215_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8w/0j/MD5E-s120180--a94abc7f82aa547d5eac01eef57683a3.mat/MD5E-s120180--a94abc7f82aa547d5eac01eef57683a3.mat

SDSU/sub-0050215/label/catROIs_sub-0050215_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/3F/W4/MD5E-s332117--c905ded5c892c2759a1541e5f6a23faa.xml/MD5E-s332117--c905ded5c892c2759a1541e5f6a23faa.xml

SDSU/sub-0050215/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050215_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SDSU/sub-0050215/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q2/Wj/MD5E-s165953--c510c7628b482143c52614745880670f.nii.gz/MD5E-s165953--c510c7628b482143c52614745880670f.nii.gz

SDSU/sub-0050215/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050215_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SDSU/sub-0050215/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6F/g4/MD5E-s185642--b1ec11bef9567387cedd9938ed25c258.nii.gz/MD5E-s185642--b1ec11bef9567387cedd9938ed25c258.nii.gz

SDSU/sub-0050215/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050215_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SDSU/sub-0050215/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1G/4x/MD5E-s252485--8b0e22ccb38fb03ac303cfe464e4a025.nii.gz/MD5E-s252485--8b0e22ccb38fb03ac303cfe464e4a025.nii.gz

SDSU/sub-0050215/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050215_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SDSU/sub-0050215/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7f/M3/MD5E-s280990--74038a1a2a047414e49f4d0c0d31f565.nii.gz/MD5E-s280990--74038a1a2a047414e49f4d0c0d31f565.nii.gz

SDSU/sub-0050215/mri/Tian_Subcortex_S2_7T_sub-0050215_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SDSU/sub-0050215/mri/Tian_Subcortex_S2_7T_sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/39/82/MD5E-s24686--2cf67b89d14e2236fe077c3cf4fa38cc.nii.gz/MD5E-s24686--2cf67b89d14e2236fe077c3cf4fa38cc.nii.gz

SDSU/sub-0050215/mri/aal3_sub-0050215_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SDSU/sub-0050215/mri/aal3_sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fg/05/MD5E-s185675--40cfa426d3573047ac1f45817d4d17cb.nii.gz/MD5E-s185675--40cfa426d3573047ac1f45817d4d17cb.nii.gz

SDSU/sub-0050215/mri/anatomy3_sub-0050215_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SDSU/sub-0050215/mri/anatomy3_sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q6/1V/MD5E-s136718--d5260c803a8a26e2d1bbe042f3217a59.nii.gz/MD5E-s136718--d5260c803a8a26e2d1bbe042f3217a59.nii.gz

SDSU/sub-0050215/mri/anon_misub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6m/mP/MD5E-s4386278--cea836ca1bf41b782613b94882c28bbc.nii.gz/MD5E-s4386278--cea836ca1bf41b782613b94882c28bbc.nii.gz

SDSU/sub-0050215/mri/anon_msub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wZ/W6/MD5E-s9752614--233d19e5128d0c989ffbbd4e68cb0ee5.nii.gz/MD5E-s9752614--233d19e5128d0c989ffbbd4e68cb0ee5.nii.gz

SDSU/sub-0050215/mri/cat_sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/vg/pX/MD5E-s100380--7dc0802207ade6cdcfc8cdc7dead4c5f.nii.gz/MD5E-s100380--7dc0802207ade6cdcfc8cdc7dead4c5f.nii.gz

SDSU/sub-0050215/mri/cobra_sub-0050215_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SDSU/sub-0050215/mri/cobra_sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wm/72/MD5E-s48102--4595a6a7def3f4f40a8ddd9cd11859ab.nii.gz/MD5E-s48102--4595a6a7def3f4f40a8ddd9cd11859ab.nii.gz

SDSU/sub-0050215/mri/hammers_sub-0050215_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SDSU/sub-0050215/mri/hammers_sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/v1/7Z/MD5E-s147712--b0bb587e63f4bcef4c9444850bc6b9a4.nii.gz/MD5E-s147712--b0bb587e63f4bcef4c9444850bc6b9a4.nii.gz

SDSU/sub-0050215/mri/ibsr_sub-0050215_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SDSU/sub-0050215/mri/ibsr_sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/63/J1/MD5E-s154287--456ba56901e8a70c0f06becd00810754.nii.gz/MD5E-s154287--456ba56901e8a70c0f06becd00810754.nii.gz

SDSU/sub-0050215/mri/it_sub-0050215_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/6v/x2/MD5E-s282--7a2335d8d131805cc0c84aef436bc6c2.mat/MD5E-s282--7a2335d8d131805cc0c84aef436bc6c2.mat

SDSU/sub-0050215/mri/it_sub-0050215_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/fX/6z/MD5E-s282--860445340ddd0e29527289666abba3c2.mat/MD5E-s282--860445340ddd0e29527289666abba3c2.mat

SDSU/sub-0050215/mri/iy_sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xW/3m/MD5E-s45463673--cfdc516e0219ebe402ffc76652159099.nii.gz/MD5E-s45463673--cfdc516e0219ebe402ffc76652159099.nii.gz

SDSU/sub-0050215/mri/julichbrain_sub-0050215_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SDSU/sub-0050215/mri/julichbrain_sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q5/6Z/MD5E-s199183--0525ca1a46f3aa0805899063ef0ea89c.nii.gz/MD5E-s199183--0525ca1a46f3aa0805899063ef0ea89c.nii.gz

SDSU/sub-0050215/mri/lpba40_sub-0050215_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SDSU/sub-0050215/mri/lpba40_sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vz/MP/MD5E-s143748--11b9721ef9d08db439aeb07d4a5820e1.nii.gz/MD5E-s143748--11b9721ef9d08db439aeb07d4a5820e1.nii.gz

SDSU/sub-0050215/mri/m0wp1sub-0050215_T1w.nii.gz

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SDSU/sub-0050215/mri/m0wp2sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050215/mri/m0wp3sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050215/mri/mori_sub-0050215_T1w.csv

@@ -0,0 +1 @@
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SDSU/sub-0050215/mri/mori_sub-0050215_T1w.nii.gz

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SDSU/sub-0050215/mri/mwp1sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050215/mri/mwp2sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050215/mri/mwp3sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050215/mri/neuromorphometrics_sub-0050215_T1w.csv

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SDSU/sub-0050215/mri/neuromorphometrics_sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050215/mri/p0sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050215/mri/p1sub-0050215_T1w.nii.gz

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SDSU/sub-0050215/mri/p2sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050215/mri/p3sub-0050215_T1w.nii.gz

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SDSU/sub-0050215/mri/rp1sub-0050215_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050215/mri/rp2sub-0050215_T1w_affine.nii.gz

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SDSU/sub-0050215/mri/rp3sub-0050215_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050215/mri/t_sub-0050215_T1w_affine_reorient.mat

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SDSU/sub-0050215/mri/t_sub-0050215_T1w_rigid_reorient.mat

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SDSU/sub-0050215/mri/thalamus_sub-0050215_T1w.csv

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SDSU/sub-0050215/mri/thalamus_sub-0050215_T1w.nii.gz

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SDSU/sub-0050215/mri/wj_sub-0050215_T1w.nii.gz

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SDSU/sub-0050215/mri/wmisub-0050215_T1w.nii.gz

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SDSU/sub-0050215/mri/wmsub-0050215_T1w.nii.gz

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SDSU/sub-0050215/mri/wp0sub-0050215_T1w.nii.gz

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SDSU/sub-0050215/mri/wp1sub-0050215_T1w.nii.gz

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SDSU/sub-0050215/mri/wp2sub-0050215_T1w.nii.gz

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SDSU/sub-0050215/mri/wp3sub-0050215_T1w.nii.gz

@@ -0,0 +1 @@
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SDSU/sub-0050215/mri/y_sub-0050215_T1w.nii.gz

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