[DATALAD RUNCMD] Compute Yale/sub-0050606

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Yale/sub-0050606/anat/sub-0050606_T1w.nii.gz"
 ],
 "outputs": [
  "Yale/sub-0050606"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Yale/sub-0050606/label/catROI_sub-0050606_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/M3/W6/MD5E-s58128--b482c0e813bda1a727a0fbbb54d1ec96.mat/MD5E-s58128--b482c0e813bda1a727a0fbbb54d1ec96.mat

Yale/sub-0050606/label/catROI_sub-0050606_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/g2/vm/MD5E-s188815--751d420dfbca118ce602fe3cf26d8d92.xml/MD5E-s188815--751d420dfbca118ce602fe3cf26d8d92.xml

Yale/sub-0050606/label/catROIs_sub-0050606_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/pk/1G/MD5E-s119922--e37bfe0d10cdd3933885f613a843d81c.mat/MD5E-s119922--e37bfe0d10cdd3933885f613a843d81c.mat

Yale/sub-0050606/label/catROIs_sub-0050606_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/7V/2k/MD5E-s331725--600b0dbb798729340c056212a9de654c.xml/MD5E-s331725--600b0dbb798729340c056212a9de654c.xml

Yale/sub-0050606/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Yale/sub-0050606/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KX/GZ/MD5E-s178294--baf6a6e6a31792cd6910e31fc30db15a.nii.gz/MD5E-s178294--baf6a6e6a31792cd6910e31fc30db15a.nii.gz

Yale/sub-0050606/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Yale/sub-0050606/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/24/px/MD5E-s199554--4a64e68ff54879da20adc5552f5fcc8c.nii.gz/MD5E-s199554--4a64e68ff54879da20adc5552f5fcc8c.nii.gz

Yale/sub-0050606/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Yale/sub-0050606/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wm/67/MD5E-s269018--edd8e7f624b30472c21e5b1c7bb04dd6.nii.gz/MD5E-s269018--edd8e7f624b30472c21e5b1c7bb04dd6.nii.gz

Yale/sub-0050606/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Yale/sub-0050606/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J3/mg/MD5E-s297860--e6c38e164356b785ca114e5aa2465d15.nii.gz/MD5E-s297860--e6c38e164356b785ca114e5aa2465d15.nii.gz

Yale/sub-0050606/mri/Tian_Subcortex_S2_7T_sub-0050606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Yale/sub-0050606/mri/Tian_Subcortex_S2_7T_sub-0050606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QP/zG/MD5E-s25035--a0038d4e92a71aef04184d86bba15724.nii.gz/MD5E-s25035--a0038d4e92a71aef04184d86bba15724.nii.gz

Yale/sub-0050606/mri/aal3_sub-0050606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Yale/sub-0050606/mri/aal3_sub-0050606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fG/Gv/MD5E-s202853--d5f861f022f021ed52ba9840771c36c4.nii.gz/MD5E-s202853--d5f861f022f021ed52ba9840771c36c4.nii.gz

Yale/sub-0050606/mri/anatomy3_sub-0050606_T1w.csv

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+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Yale/sub-0050606/mri/anatomy3_sub-0050606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/GW/x3/MD5E-s143973--71d03d3fabb2f054ec3e51d17ecc2386.nii.gz/MD5E-s143973--71d03d3fabb2f054ec3e51d17ecc2386.nii.gz

Yale/sub-0050606/mri/anon_misub-0050606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F6/Pw/MD5E-s4724037--86d6561710e34cb49cbeb704ed6fdf08.nii.gz/MD5E-s4724037--86d6561710e34cb49cbeb704ed6fdf08.nii.gz

Yale/sub-0050606/mri/anon_msub-0050606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/01/g6/MD5E-s11128865--32c1e74e65d1cf56abbf56800f1c0b8a.nii.gz/MD5E-s11128865--32c1e74e65d1cf56abbf56800f1c0b8a.nii.gz

Yale/sub-0050606/mri/cat_sub-0050606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wF/W4/MD5E-s101616--0ba714989e67ac41bb6c52274b187f4e.nii.gz/MD5E-s101616--0ba714989e67ac41bb6c52274b187f4e.nii.gz

Yale/sub-0050606/mri/cobra_sub-0050606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Yale/sub-0050606/mri/cobra_sub-0050606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gX/Wz/MD5E-s51382--16e0d454324d7a77b1fdf90a32453ab4.nii.gz/MD5E-s51382--16e0d454324d7a77b1fdf90a32453ab4.nii.gz

Yale/sub-0050606/mri/hammers_sub-0050606_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Yale/sub-0050606/mri/hammers_sub-0050606_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mg/WP/MD5E-s158491--968107fec88a7d7ea6eb580a4f26ce1d.nii.gz/MD5E-s158491--968107fec88a7d7ea6eb580a4f26ce1d.nii.gz

Yale/sub-0050606/mri/ibsr_sub-0050606_T1w.csv

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+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Yale/sub-0050606/mri/ibsr_sub-0050606_T1w.nii.gz

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+../../../.git/annex/objects/kP/88/MD5E-s167043--40bea5b05c22da2dd8cdb00ac6de8de8.nii.gz/MD5E-s167043--40bea5b05c22da2dd8cdb00ac6de8de8.nii.gz

Yale/sub-0050606/mri/it_sub-0050606_T1w_affine_reorient.mat

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+../../../.git/annex/objects/2K/vz/MD5E-s283--3aa25cd4861c3cae07682af80ab7a550.mat/MD5E-s283--3aa25cd4861c3cae07682af80ab7a550.mat

Yale/sub-0050606/mri/it_sub-0050606_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/P4/g3/MD5E-s284--4063f92035bf31c2196e0a605bc9c2b0.mat/MD5E-s284--4063f92035bf31c2196e0a605bc9c2b0.mat

Yale/sub-0050606/mri/iy_sub-0050606_T1w.nii.gz

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+../../../.git/annex/objects/pF/4M/MD5E-s50420123--021cec8c475d796e4659cc279be2e907.nii.gz/MD5E-s50420123--021cec8c475d796e4659cc279be2e907.nii.gz

Yale/sub-0050606/mri/julichbrain_sub-0050606_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Yale/sub-0050606/mri/julichbrain_sub-0050606_T1w.nii.gz

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+../../../.git/annex/objects/3z/wM/MD5E-s215673--a51389f08474df7d8aad20fc2f5bae35.nii.gz/MD5E-s215673--a51389f08474df7d8aad20fc2f5bae35.nii.gz

Yale/sub-0050606/mri/lpba40_sub-0050606_T1w.csv

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+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Yale/sub-0050606/mri/lpba40_sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/m0wp1sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/m0wp2sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/m0wp3sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/mori_sub-0050606_T1w.csv

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Yale/sub-0050606/mri/mori_sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/mwp1sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/mwp2sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/mwp3sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/neuromorphometrics_sub-0050606_T1w.csv

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Yale/sub-0050606/mri/neuromorphometrics_sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/p0sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/p1sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/p2sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/p3sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/rp1sub-0050606_T1w_affine.nii.gz

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Yale/sub-0050606/mri/rp2sub-0050606_T1w_affine.nii.gz

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Yale/sub-0050606/mri/rp3sub-0050606_T1w_affine.nii.gz

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Yale/sub-0050606/mri/t_sub-0050606_T1w_affine_reorient.mat

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Yale/sub-0050606/mri/t_sub-0050606_T1w_rigid_reorient.mat

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Yale/sub-0050606/mri/thalamus_sub-0050606_T1w.csv

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Yale/sub-0050606/mri/thalamus_sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/wj_sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/wmisub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/wmsub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/wp0sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/wp1sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/wp2sub-0050606_T1w.nii.gz

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Yale/sub-0050606/mri/wp3sub-0050606_T1w.nii.gz

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