[DATALAD RUNCMD] Compute NYU/sub-0051101

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/NYU/sub-0051101/anat/sub-0051101_T1w.nii.gz"
 ],
 "outputs": [
  "NYU/sub-0051101"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU/sub-0051101/label/catROI_sub-0051101_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/W2/pF/MD5E-s58063--dddeeeea1e4acf1980d83195beb40a83.mat/MD5E-s58063--dddeeeea1e4acf1980d83195beb40a83.mat

NYU/sub-0051101/label/catROI_sub-0051101_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/KM/Gq/MD5E-s188870--9a2ba360d8b5cdb6524085c30f7e9d5b.xml/MD5E-s188870--9a2ba360d8b5cdb6524085c30f7e9d5b.xml

NYU/sub-0051101/label/catROIs_sub-0051101_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/18/8j/MD5E-s120241--5b27f8bba19011ea1aef797943fb0d1d.mat/MD5E-s120241--5b27f8bba19011ea1aef797943fb0d1d.mat

NYU/sub-0051101/label/catROIs_sub-0051101_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fw/Gq/MD5E-s332220--4b0b57e063482085a445ef7ce90cc716.xml/MD5E-s332220--4b0b57e063482085a445ef7ce90cc716.xml

NYU/sub-0051101/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051101_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU/sub-0051101/mri/Schaefer2018_100Parcels_17Networks_order_sub-0051101_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zX/18/MD5E-s151435--f09d1acd4a4693c035a7f1bdbce1bb3a.nii.gz/MD5E-s151435--f09d1acd4a4693c035a7f1bdbce1bb3a.nii.gz

NYU/sub-0051101/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051101_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU/sub-0051101/mri/Schaefer2018_200Parcels_17Networks_order_sub-0051101_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/88/Z2/MD5E-s168582--935948408bb7c22813c12064ed9defb5.nii.gz/MD5E-s168582--935948408bb7c22813c12064ed9defb5.nii.gz

NYU/sub-0051101/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051101_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU/sub-0051101/mri/Schaefer2018_400Parcels_17Networks_order_sub-0051101_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mG/84/MD5E-s227825--1e03c9418894e00b207e5e063489ac0e.nii.gz/MD5E-s227825--1e03c9418894e00b207e5e063489ac0e.nii.gz

NYU/sub-0051101/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051101_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU/sub-0051101/mri/Schaefer2018_600Parcels_17Networks_order_sub-0051101_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x5/xz/MD5E-s251963--178212e524644c1fe2b2f6701aabee6b.nii.gz/MD5E-s251963--178212e524644c1fe2b2f6701aabee6b.nii.gz

NYU/sub-0051101/mri/Tian_Subcortex_S2_7T_sub-0051101_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU/sub-0051101/mri/Tian_Subcortex_S2_7T_sub-0051101_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F1/66/MD5E-s20354--9e5fdae991afaf8bb7ef92481b5c7dd8.nii.gz/MD5E-s20354--9e5fdae991afaf8bb7ef92481b5c7dd8.nii.gz

NYU/sub-0051101/mri/aal3_sub-0051101_T1w.csv

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NYU/sub-0051101/mri/aal3_sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/anatomy3_sub-0051101_T1w.csv

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NYU/sub-0051101/mri/anatomy3_sub-0051101_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6z/vg/MD5E-s121114--fe406147bd8a20f95fc427fc3218ea60.nii.gz/MD5E-s121114--fe406147bd8a20f95fc427fc3218ea60.nii.gz

NYU/sub-0051101/mri/anon_misub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/anon_msub-0051101_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qq/Z3/MD5E-s9754324--c030c3d220e76ae3659760e6ad992e20.nii.gz/MD5E-s9754324--c030c3d220e76ae3659760e6ad992e20.nii.gz

NYU/sub-0051101/mri/cat_sub-0051101_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZK/vm/MD5E-s88776--502635ae026b74ec104e6de025201fa3.nii.gz/MD5E-s88776--502635ae026b74ec104e6de025201fa3.nii.gz

NYU/sub-0051101/mri/cobra_sub-0051101_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU/sub-0051101/mri/cobra_sub-0051101_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wq/Xp/MD5E-s42444--cc68de3942a67058ece18609d6f09b54.nii.gz/MD5E-s42444--cc68de3942a67058ece18609d6f09b54.nii.gz

NYU/sub-0051101/mri/hammers_sub-0051101_T1w.csv

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+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU/sub-0051101/mri/hammers_sub-0051101_T1w.nii.gz

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+../../../.git/annex/objects/jJ/zZ/MD5E-s133087--0c7d1c303c13960bd6b9b61b72b04a41.nii.gz/MD5E-s133087--0c7d1c303c13960bd6b9b61b72b04a41.nii.gz

NYU/sub-0051101/mri/ibsr_sub-0051101_T1w.csv

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NYU/sub-0051101/mri/ibsr_sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/it_sub-0051101_T1w_affine_reorient.mat

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+../../../.git/annex/objects/k5/9P/MD5E-s283--3d5430e16ad802c7b85d8e9f1d8b7f5e.mat/MD5E-s283--3d5430e16ad802c7b85d8e9f1d8b7f5e.mat

NYU/sub-0051101/mri/it_sub-0051101_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xm/Fp/MD5E-s284--4fb33a5d17c97919ac0f9312eef5a4bc.mat/MD5E-s284--4fb33a5d17c97919ac0f9312eef5a4bc.mat

NYU/sub-0051101/mri/iy_sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/julichbrain_sub-0051101_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU/sub-0051101/mri/julichbrain_sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/lpba40_sub-0051101_T1w.csv

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NYU/sub-0051101/mri/lpba40_sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/m0wp1sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/m0wp2sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/m0wp3sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/mori_sub-0051101_T1w.csv

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NYU/sub-0051101/mri/mori_sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/mwp1sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/mwp2sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/mwp3sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/neuromorphometrics_sub-0051101_T1w.csv

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NYU/sub-0051101/mri/neuromorphometrics_sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/p0sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/p1sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/p2sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/p3sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/rp1sub-0051101_T1w_affine.nii.gz

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NYU/sub-0051101/mri/rp2sub-0051101_T1w_affine.nii.gz

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NYU/sub-0051101/mri/rp3sub-0051101_T1w_affine.nii.gz

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NYU/sub-0051101/mri/t_sub-0051101_T1w_affine_reorient.mat

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NYU/sub-0051101/mri/t_sub-0051101_T1w_rigid_reorient.mat

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NYU/sub-0051101/mri/thalamus_sub-0051101_T1w.csv

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NYU/sub-0051101/mri/thalamus_sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/wj_sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/wmisub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/wmsub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/wp0sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/wp1sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/wp2sub-0051101_T1w.nii.gz

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NYU/sub-0051101/mri/wp3sub-0051101_T1w.nii.gz

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