[DATALAD RUNCMD] Compute OHSU/sub-0050149

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/OHSU/sub-0050149/anat/sub-0050149_T1w.nii.gz"
 ],
 "outputs": [
  "OHSU/sub-0050149"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

OHSU/sub-0050149/label/catROI_sub-0050149_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/jP/Vz/MD5E-s61380--89ce8bdbd02e7551740d43145183feae.mat/MD5E-s61380--89ce8bdbd02e7551740d43145183feae.mat

OHSU/sub-0050149/label/catROI_sub-0050149_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Qz/xK/MD5E-s188669--00b382e4327c725a64a893629fd62934.xml/MD5E-s188669--00b382e4327c725a64a893629fd62934.xml

OHSU/sub-0050149/label/catROIs_sub-0050149_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/g6/j1/MD5E-s120056--8202ac5fe9622262b9755324a3518377.mat/MD5E-s120056--8202ac5fe9622262b9755324a3518377.mat

OHSU/sub-0050149/label/catROIs_sub-0050149_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/z8/67/MD5E-s332118--aed1303091e768d7e7575236618fad5a.xml/MD5E-s332118--aed1303091e768d7e7575236618fad5a.xml

OHSU/sub-0050149/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050149_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

OHSU/sub-0050149/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/X2/0Q/MD5E-s172282--015d00dc5ebb840f0f4d7970c9a2b807.nii.gz/MD5E-s172282--015d00dc5ebb840f0f4d7970c9a2b807.nii.gz

OHSU/sub-0050149/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050149_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

OHSU/sub-0050149/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MP/kX/MD5E-s192886--d5959cca3b4e1e1cd51bc4aaaa69f435.nii.gz/MD5E-s192886--d5959cca3b4e1e1cd51bc4aaaa69f435.nii.gz

OHSU/sub-0050149/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050149_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

OHSU/sub-0050149/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pq/2q/MD5E-s258845--812fee4f0ad01e71688b58e0c8c6fbf7.nii.gz/MD5E-s258845--812fee4f0ad01e71688b58e0c8c6fbf7.nii.gz

OHSU/sub-0050149/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050149_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

OHSU/sub-0050149/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/f9/6f/MD5E-s289085--37c0e6f9b701146a2afa59b3cddb9255.nii.gz/MD5E-s289085--37c0e6f9b701146a2afa59b3cddb9255.nii.gz

OHSU/sub-0050149/mri/Tian_Subcortex_S2_7T_sub-0050149_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

OHSU/sub-0050149/mri/Tian_Subcortex_S2_7T_sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mG/FZ/MD5E-s22142--5311343abd238267e82063b1a7474999.nii.gz/MD5E-s22142--5311343abd238267e82063b1a7474999.nii.gz

OHSU/sub-0050149/mri/aal3_sub-0050149_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

OHSU/sub-0050149/mri/aal3_sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/xG/GJ/MD5E-s195487--ebeca31ca546c87e235dd4e60d13cbcf.nii.gz/MD5E-s195487--ebeca31ca546c87e235dd4e60d13cbcf.nii.gz

OHSU/sub-0050149/mri/anatomy3_sub-0050149_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

OHSU/sub-0050149/mri/anatomy3_sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/p3/8K/MD5E-s139428--7627fcc8a61d458eff790a932ee48c38.nii.gz/MD5E-s139428--7627fcc8a61d458eff790a932ee48c38.nii.gz

OHSU/sub-0050149/mri/anon_misub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jw/0F/MD5E-s7870479--c5c68400b9159c0bb54cde7b465b21ed.nii.gz/MD5E-s7870479--c5c68400b9159c0bb54cde7b465b21ed.nii.gz

OHSU/sub-0050149/mri/anon_msub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m8/gw/MD5E-s8604576--2dd4b32a803eb3340c871f0180a3bf44.nii.gz/MD5E-s8604576--2dd4b32a803eb3340c871f0180a3bf44.nii.gz

OHSU/sub-0050149/mri/cat_sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pm/07/MD5E-s99377--fd9155c48c160ae725cecba2aeb08bda.nii.gz/MD5E-s99377--fd9155c48c160ae725cecba2aeb08bda.nii.gz

OHSU/sub-0050149/mri/cobra_sub-0050149_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

OHSU/sub-0050149/mri/cobra_sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MP/wm/MD5E-s45737--0388569664c488444e09d7e86a5c3d5a.nii.gz/MD5E-s45737--0388569664c488444e09d7e86a5c3d5a.nii.gz

OHSU/sub-0050149/mri/hammers_sub-0050149_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

OHSU/sub-0050149/mri/hammers_sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZW/22/MD5E-s151634--6466b6f8b94963080ad0c8d9e7ccbf47.nii.gz/MD5E-s151634--6466b6f8b94963080ad0c8d9e7ccbf47.nii.gz

OHSU/sub-0050149/mri/ibsr_sub-0050149_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

OHSU/sub-0050149/mri/ibsr_sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kj/Jg/MD5E-s161063--c498222d822e0a1188d73e09b4dc42e4.nii.gz/MD5E-s161063--c498222d822e0a1188d73e09b4dc42e4.nii.gz

OHSU/sub-0050149/mri/it_sub-0050149_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/xx/Xv/MD5E-s284--05ec3c955b1a3fb5382ce462e7553f0b.mat/MD5E-s284--05ec3c955b1a3fb5382ce462e7553f0b.mat

OHSU/sub-0050149/mri/it_sub-0050149_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/80/M3/MD5E-s283--70605acd80dbce446a13051a2bd6f07f.mat/MD5E-s283--70605acd80dbce446a13051a2bd6f07f.mat

OHSU/sub-0050149/mri/iy_sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1w/29/MD5E-s46524364--364f391c0b54af7302c5f2d8f86fc6da.nii.gz/MD5E-s46524364--364f391c0b54af7302c5f2d8f86fc6da.nii.gz

OHSU/sub-0050149/mri/julichbrain_sub-0050149_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

OHSU/sub-0050149/mri/julichbrain_sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XX/M9/MD5E-s207583--10762e29c066a5b70b09ed7e0b1b2bff.nii.gz/MD5E-s207583--10762e29c066a5b70b09ed7e0b1b2bff.nii.gz

OHSU/sub-0050149/mri/lpba40_sub-0050149_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

OHSU/sub-0050149/mri/lpba40_sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050149/mri/m0wp1sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mw/zW/MD5E-s2581767--2e78664e529f361ac747b6499c584b95.nii.gz/MD5E-s2581767--2e78664e529f361ac747b6499c584b95.nii.gz

OHSU/sub-0050149/mri/m0wp2sub-0050149_T1w.nii.gz

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OHSU/sub-0050149/mri/m0wp3sub-0050149_T1w.nii.gz

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+../../../.git/annex/objects/W1/86/MD5E-s2394859--f584ced964b41b5f12cb75337f6b817e.nii.gz/MD5E-s2394859--f584ced964b41b5f12cb75337f6b817e.nii.gz

OHSU/sub-0050149/mri/mori_sub-0050149_T1w.csv

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OHSU/sub-0050149/mri/mori_sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050149/mri/mwp1sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050149/mri/mwp2sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qM/wx/MD5E-s2278303--221f5d472e2bcb48ca30793de59c3682.nii.gz/MD5E-s2278303--221f5d472e2bcb48ca30793de59c3682.nii.gz

OHSU/sub-0050149/mri/mwp3sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KG/0w/MD5E-s2394197--1087760488da46b42acb4c849f18ca3c.nii.gz/MD5E-s2394197--1087760488da46b42acb4c849f18ca3c.nii.gz

OHSU/sub-0050149/mri/neuromorphometrics_sub-0050149_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

OHSU/sub-0050149/mri/neuromorphometrics_sub-0050149_T1w.nii.gz

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OHSU/sub-0050149/mri/p0sub-0050149_T1w.nii.gz

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+../../../.git/annex/objects/2K/3X/MD5E-s600799--1837985980c6201798173ab23c5397c0.nii.gz/MD5E-s600799--1837985980c6201798173ab23c5397c0.nii.gz

OHSU/sub-0050149/mri/p1sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wz/VX/MD5E-s642844--836241fb53f7d0f97007d8895175c116.nii.gz/MD5E-s642844--836241fb53f7d0f97007d8895175c116.nii.gz

OHSU/sub-0050149/mri/p2sub-0050149_T1w.nii.gz

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OHSU/sub-0050149/mri/p3sub-0050149_T1w.nii.gz

@@ -0,0 +1 @@
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OHSU/sub-0050149/mri/rp1sub-0050149_T1w_affine.nii.gz

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OHSU/sub-0050149/mri/rp2sub-0050149_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z5/36/MD5E-s303078--20ea1d07a88a705d490b82acdfb00a37.nii.gz/MD5E-s303078--20ea1d07a88a705d490b82acdfb00a37.nii.gz

OHSU/sub-0050149/mri/rp3sub-0050149_T1w_affine.nii.gz

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OHSU/sub-0050149/mri/t_sub-0050149_T1w_affine_reorient.mat

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OHSU/sub-0050149/mri/t_sub-0050149_T1w_rigid_reorient.mat

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OHSU/sub-0050149/mri/thalamus_sub-0050149_T1w.csv

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OHSU/sub-0050149/mri/thalamus_sub-0050149_T1w.nii.gz

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OHSU/sub-0050149/mri/wj_sub-0050149_T1w.nii.gz

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OHSU/sub-0050149/mri/wmisub-0050149_T1w.nii.gz

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OHSU/sub-0050149/mri/wmsub-0050149_T1w.nii.gz

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OHSU/sub-0050149/mri/wp0sub-0050149_T1w.nii.gz

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OHSU/sub-0050149/mri/wp1sub-0050149_T1w.nii.gz

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OHSU/sub-0050149/mri/wp2sub-0050149_T1w.nii.gz

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OHSU/sub-0050149/mri/wp3sub-0050149_T1w.nii.gz

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