[DATALAD RUNCMD] Compute UM_1/sub-0050315

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/UM_1/sub-0050315/anat/sub-0050315_T1w.nii.gz"
 ],
 "outputs": [
  "UM_1/sub-0050315"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UM_1/sub-0050315/label/catROI_sub-0050315_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/4f/KG/MD5E-s61379--69e184d9983f9af218e6ddfa08262ae3.mat/MD5E-s61379--69e184d9983f9af218e6ddfa08262ae3.mat

UM_1/sub-0050315/label/catROI_sub-0050315_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wm/gK/MD5E-s188852--c2e9d57334e65da644f76f5a3661fede.xml/MD5E-s188852--c2e9d57334e65da644f76f5a3661fede.xml

UM_1/sub-0050315/label/catROIs_sub-0050315_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/QV/j4/MD5E-s120110--1b0f57a7dcb0aaedd1c278f76a75ef20.mat/MD5E-s120110--1b0f57a7dcb0aaedd1c278f76a75ef20.mat

UM_1/sub-0050315/label/catROIs_sub-0050315_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/48/mw/MD5E-s332134--27f94d8c9137869fac6e1128377f4e5c.xml/MD5E-s332134--27f94d8c9137869fac6e1128377f4e5c.xml

UM_1/sub-0050315/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050315_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UM_1/sub-0050315/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050315_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/w6/zZ/MD5E-s160003--4c4f6940585d2c04b49c72d6a8ee1197.nii.gz/MD5E-s160003--4c4f6940585d2c04b49c72d6a8ee1197.nii.gz

UM_1/sub-0050315/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050315_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UM_1/sub-0050315/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050315_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mj/08/MD5E-s180019--5a34bc4586f1e24978234aa208bdffbd.nii.gz/MD5E-s180019--5a34bc4586f1e24978234aa208bdffbd.nii.gz

UM_1/sub-0050315/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050315_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UM_1/sub-0050315/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050315_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050315/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050315_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UM_1/sub-0050315/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050315_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3w/V5/MD5E-s251545--c009601ccfa33f23098145361264ae38.nii.gz/MD5E-s251545--c009601ccfa33f23098145361264ae38.nii.gz

UM_1/sub-0050315/mri/Tian_Subcortex_S2_7T_sub-0050315_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UM_1/sub-0050315/mri/Tian_Subcortex_S2_7T_sub-0050315_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3k/p0/MD5E-s20889--8be35a74136eb3f58cc97c69ce087f1b.nii.gz/MD5E-s20889--8be35a74136eb3f58cc97c69ce087f1b.nii.gz

UM_1/sub-0050315/mri/aal3_sub-0050315_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050315/mri/aal3_sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/anatomy3_sub-0050315_T1w.csv

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UM_1/sub-0050315/mri/anatomy3_sub-0050315_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Z7/z9/MD5E-s128779--281397f308e06abc837cb779fc5ec89d.nii.gz/MD5E-s128779--281397f308e06abc837cb779fc5ec89d.nii.gz

UM_1/sub-0050315/mri/anon_misub-0050315_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050315/mri/anon_msub-0050315_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/48/Pz/MD5E-s7546823--7e94b1a01cb155c0e6d81480bbdcc315.nii.gz/MD5E-s7546823--7e94b1a01cb155c0e6d81480bbdcc315.nii.gz

UM_1/sub-0050315/mri/cat_sub-0050315_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fv/MM/MD5E-s97636--bba9e697d97cd5e4b2fa8c92fadae0b0.nii.gz/MD5E-s97636--bba9e697d97cd5e4b2fa8c92fadae0b0.nii.gz

UM_1/sub-0050315/mri/cobra_sub-0050315_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UM_1/sub-0050315/mri/cobra_sub-0050315_T1w.nii.gz

@@ -0,0 +1 @@
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UM_1/sub-0050315/mri/hammers_sub-0050315_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UM_1/sub-0050315/mri/hammers_sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/ibsr_sub-0050315_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050315/mri/ibsr_sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/it_sub-0050315_T1w_affine_reorient.mat

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UM_1/sub-0050315/mri/it_sub-0050315_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/px/zM/MD5E-s281--3795146241d8b87ef0c1efb37893e738.mat/MD5E-s281--3795146241d8b87ef0c1efb37893e738.mat

UM_1/sub-0050315/mri/iy_sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/julichbrain_sub-0050315_T1w.csv

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+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

UM_1/sub-0050315/mri/julichbrain_sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/lpba40_sub-0050315_T1w.csv

@@ -0,0 +1 @@
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UM_1/sub-0050315/mri/lpba40_sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/m0wp1sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/m0wp2sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/m0wp3sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/mori_sub-0050315_T1w.csv

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UM_1/sub-0050315/mri/mori_sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/mwp1sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/mwp2sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/mwp3sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/neuromorphometrics_sub-0050315_T1w.csv

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UM_1/sub-0050315/mri/neuromorphometrics_sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/p0sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/p1sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/p2sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/p3sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/rp1sub-0050315_T1w_affine.nii.gz

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UM_1/sub-0050315/mri/rp2sub-0050315_T1w_affine.nii.gz

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UM_1/sub-0050315/mri/rp3sub-0050315_T1w_affine.nii.gz

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UM_1/sub-0050315/mri/t_sub-0050315_T1w_affine_reorient.mat

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UM_1/sub-0050315/mri/t_sub-0050315_T1w_rigid_reorient.mat

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UM_1/sub-0050315/mri/thalamus_sub-0050315_T1w.csv

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UM_1/sub-0050315/mri/thalamus_sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/wj_sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/wmisub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/wmsub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/wp0sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/wp1sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/wp2sub-0050315_T1w.nii.gz

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UM_1/sub-0050315/mri/wp3sub-0050315_T1w.nii.gz

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