[DATALAD RUNCMD] Compute CMU_a/sub-0050642

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/CMU_a/sub-0050642/anat/sub-0050642_T1w.nii.gz"
 ],
 "outputs": [
  "CMU_a/sub-0050642"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

CMU_a/sub-0050642/label/catROI_sub-0050642_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wq/P5/MD5E-s58135--c198e4918fe13538b28f122d5d2eafe1.mat/MD5E-s58135--c198e4918fe13538b28f122d5d2eafe1.mat

CMU_a/sub-0050642/label/catROI_sub-0050642_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q4/m7/MD5E-s188790--64c23abd5ffe3d8ecd8c100a58b84d09.xml/MD5E-s188790--64c23abd5ffe3d8ecd8c100a58b84d09.xml

CMU_a/sub-0050642/label/catROIs_sub-0050642_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/kf/wg/MD5E-s120220--5c20096329d33e20adf935a9a0f5f73d.mat/MD5E-s120220--5c20096329d33e20adf935a9a0f5f73d.mat

CMU_a/sub-0050642/label/catROIs_sub-0050642_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/1F/mw/MD5E-s332211--0360a7f9214d4f519c680c0a463bdb02.xml/MD5E-s332211--0360a7f9214d4f519c680c0a463bdb02.xml

CMU_a/sub-0050642/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050642_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

CMU_a/sub-0050642/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/94/Mz/MD5E-s162977--38498b050c48910adc76c271abe730aa.nii.gz/MD5E-s162977--38498b050c48910adc76c271abe730aa.nii.gz

CMU_a/sub-0050642/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050642_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

CMU_a/sub-0050642/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7V/ZZ/MD5E-s183211--4fa22bb1dadade0e69e9369f763c870f.nii.gz/MD5E-s183211--4fa22bb1dadade0e69e9369f763c870f.nii.gz

CMU_a/sub-0050642/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050642_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

CMU_a/sub-0050642/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZQ/ZP/MD5E-s244050--5b2aea48a06c3579d825f633a921f222.nii.gz/MD5E-s244050--5b2aea48a06c3579d825f633a921f222.nii.gz

CMU_a/sub-0050642/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050642_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

CMU_a/sub-0050642/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/WG/xw/MD5E-s270983--3905a241017e38915552e3515f11a6f0.nii.gz/MD5E-s270983--3905a241017e38915552e3515f11a6f0.nii.gz

CMU_a/sub-0050642/mri/Tian_Subcortex_S2_7T_sub-0050642_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

CMU_a/sub-0050642/mri/Tian_Subcortex_S2_7T_sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jP/XK/MD5E-s19122--a17611da6c825d53ed68716cf2a9accd.nii.gz/MD5E-s19122--a17611da6c825d53ed68716cf2a9accd.nii.gz

CMU_a/sub-0050642/mri/aal3_sub-0050642_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

CMU_a/sub-0050642/mri/aal3_sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/gf/Kv/MD5E-s187531--4de2120ecbb42de79aabebf6fe2580b1.nii.gz/MD5E-s187531--4de2120ecbb42de79aabebf6fe2580b1.nii.gz

CMU_a/sub-0050642/mri/anatomy3_sub-0050642_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

CMU_a/sub-0050642/mri/anatomy3_sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K0/Pz/MD5E-s133009--51700c19aff59a6aa6ad741cfc21f6ce.nii.gz/MD5E-s133009--51700c19aff59a6aa6ad741cfc21f6ce.nii.gz

CMU_a/sub-0050642/mri/anon_misub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KP/Px/MD5E-s7274682--ad597104d5b238df8ee87f074bdcf265.nii.gz/MD5E-s7274682--ad597104d5b238df8ee87f074bdcf265.nii.gz

CMU_a/sub-0050642/mri/anon_msub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wq/WW/MD5E-s6792143--296c2c29bb89953f4ce4fa580fdc2651.nii.gz/MD5E-s6792143--296c2c29bb89953f4ce4fa580fdc2651.nii.gz

CMU_a/sub-0050642/mri/cat_sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F0/85/MD5E-s100122--13bbd448d9040d4a4cf148c8ce210cf9.nii.gz/MD5E-s100122--13bbd448d9040d4a4cf148c8ce210cf9.nii.gz

CMU_a/sub-0050642/mri/cobra_sub-0050642_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

CMU_a/sub-0050642/mri/cobra_sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Wk/7z/MD5E-s44947--e791955454b985d856f42d77122450b6.nii.gz/MD5E-s44947--e791955454b985d856f42d77122450b6.nii.gz

CMU_a/sub-0050642/mri/hammers_sub-0050642_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

CMU_a/sub-0050642/mri/hammers_sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/pw/26/MD5E-s145334--6dcdaf5d237cdad19a7cdd9e2498a2e3.nii.gz/MD5E-s145334--6dcdaf5d237cdad19a7cdd9e2498a2e3.nii.gz

CMU_a/sub-0050642/mri/ibsr_sub-0050642_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

CMU_a/sub-0050642/mri/ibsr_sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/JZ/GQ/MD5E-s154072--946915277384c279a6e9aed1fe72367d.nii.gz/MD5E-s154072--946915277384c279a6e9aed1fe72367d.nii.gz

CMU_a/sub-0050642/mri/it_sub-0050642_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/F6/0v/MD5E-s282--227261b380e1e5450ac33e81bf66067a.mat/MD5E-s282--227261b380e1e5450ac33e81bf66067a.mat

CMU_a/sub-0050642/mri/it_sub-0050642_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/95/7v/MD5E-s283--26b04f908736c2b94fa686bc41b90042.mat/MD5E-s283--26b04f908736c2b94fa686bc41b90042.mat

CMU_a/sub-0050642/mri/iy_sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5J/J9/MD5E-s43536597--5f3458cb79aaae83d631ac38feaccb6f.nii.gz/MD5E-s43536597--5f3458cb79aaae83d631ac38feaccb6f.nii.gz

CMU_a/sub-0050642/mri/julichbrain_sub-0050642_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

CMU_a/sub-0050642/mri/julichbrain_sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/6W/MD5E-s196605--1c07ff57f7e109a0e982b69c16ac24b2.nii.gz/MD5E-s196605--1c07ff57f7e109a0e982b69c16ac24b2.nii.gz

CMU_a/sub-0050642/mri/lpba40_sub-0050642_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

CMU_a/sub-0050642/mri/lpba40_sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050642/mri/m0wp1sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zm/kP/MD5E-s2590285--67e622f12acfc989db01b9a9b029d2df.nii.gz/MD5E-s2590285--67e622f12acfc989db01b9a9b029d2df.nii.gz

CMU_a/sub-0050642/mri/m0wp2sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050642/mri/m0wp3sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VK/9w/MD5E-s2537547--15002a19cbcec016a934f53227c26c44.nii.gz/MD5E-s2537547--15002a19cbcec016a934f53227c26c44.nii.gz

CMU_a/sub-0050642/mri/mori_sub-0050642_T1w.csv

@@ -0,0 +1 @@
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CMU_a/sub-0050642/mri/mori_sub-0050642_T1w.nii.gz

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CMU_a/sub-0050642/mri/mwp1sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/50/kF/MD5E-s2592419--6bbb2e5db6bffeb453a5f384bcb6647a.nii.gz/MD5E-s2592419--6bbb2e5db6bffeb453a5f384bcb6647a.nii.gz

CMU_a/sub-0050642/mri/mwp2sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5Q/3X/MD5E-s2335340--6e70c37065e478cac7fe9588586db368.nii.gz/MD5E-s2335340--6e70c37065e478cac7fe9588586db368.nii.gz

CMU_a/sub-0050642/mri/mwp3sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q2/PQ/MD5E-s2534326--d4c852ddb9afa667a2bc8e5707ff2bd3.nii.gz/MD5E-s2534326--d4c852ddb9afa667a2bc8e5707ff2bd3.nii.gz

CMU_a/sub-0050642/mri/neuromorphometrics_sub-0050642_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

CMU_a/sub-0050642/mri/neuromorphometrics_sub-0050642_T1w.nii.gz

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CMU_a/sub-0050642/mri/p0sub-0050642_T1w.nii.gz

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CMU_a/sub-0050642/mri/p1sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050642/mri/p2sub-0050642_T1w.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050642/mri/p3sub-0050642_T1w.nii.gz

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CMU_a/sub-0050642/mri/rp1sub-0050642_T1w_affine.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050642/mri/rp2sub-0050642_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Fk/Jv/MD5E-s318823--a8104a882965335858d32dc8bf411a4c.nii.gz/MD5E-s318823--a8104a882965335858d32dc8bf411a4c.nii.gz

CMU_a/sub-0050642/mri/rp3sub-0050642_T1w_affine.nii.gz

@@ -0,0 +1 @@
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CMU_a/sub-0050642/mri/t_sub-0050642_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pq/vQ/MD5E-s284--eda241f04cabba866287622fef2a2df2.mat/MD5E-s284--eda241f04cabba866287622fef2a2df2.mat

CMU_a/sub-0050642/mri/t_sub-0050642_T1w_rigid_reorient.mat

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CMU_a/sub-0050642/mri/thalamus_sub-0050642_T1w.csv

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CMU_a/sub-0050642/mri/thalamus_sub-0050642_T1w.nii.gz

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CMU_a/sub-0050642/mri/wj_sub-0050642_T1w.nii.gz

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CMU_a/sub-0050642/mri/wmisub-0050642_T1w.nii.gz

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CMU_a/sub-0050642/mri/wmsub-0050642_T1w.nii.gz

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CMU_a/sub-0050642/mri/wp0sub-0050642_T1w.nii.gz

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CMU_a/sub-0050642/mri/wp1sub-0050642_T1w.nii.gz

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CMU_a/sub-0050642/mri/wp2sub-0050642_T1w.nii.gz

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CMU_a/sub-0050642/mri/wp3sub-0050642_T1w.nii.gz

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