[DATALAD RUNCMD] Compute Leuven_1/sub-0050703

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/Leuven_1/sub-0050703/anat/sub-0050703_T1w.nii.gz"
 ],
 "outputs": [
  "Leuven_1/sub-0050703"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Leuven_1/sub-0050703/label/catROI_sub-0050703_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/83/G8/MD5E-s61316--fd2d9261b3e7389169fc940c03985ff3.mat/MD5E-s61316--fd2d9261b3e7389169fc940c03985ff3.mat

Leuven_1/sub-0050703/label/catROI_sub-0050703_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/0j/PM/MD5E-s188856--625aae1ca8bc3f32b017217d686c9d4a.xml/MD5E-s188856--625aae1ca8bc3f32b017217d686c9d4a.xml

Leuven_1/sub-0050703/label/catROIs_sub-0050703_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/3V/fq/MD5E-s120011--676ddce39593007153e62d3fe3913fb5.mat/MD5E-s120011--676ddce39593007153e62d3fe3913fb5.mat

Leuven_1/sub-0050703/label/catROIs_sub-0050703_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/wx/Q4/MD5E-s332119--47c2233f4f67b9306bb1e8c9161e3435.xml/MD5E-s332119--47c2233f4f67b9306bb1e8c9161e3435.xml

Leuven_1/sub-0050703/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050703_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Leuven_1/sub-0050703/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jm/vq/MD5E-s181680--10e30b48cded78adf3a5aeef9484fd9c.nii.gz/MD5E-s181680--10e30b48cded78adf3a5aeef9484fd9c.nii.gz

Leuven_1/sub-0050703/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050703_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Leuven_1/sub-0050703/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qG/Wp/MD5E-s203028--4ead32c9e817f9ac35e615d9f65861b2.nii.gz/MD5E-s203028--4ead32c9e817f9ac35e615d9f65861b2.nii.gz

Leuven_1/sub-0050703/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050703_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Leuven_1/sub-0050703/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZQ/69/MD5E-s258314--ef24f8f49b2fc726959c81b3f61d0f1a.nii.gz/MD5E-s258314--ef24f8f49b2fc726959c81b3f61d0f1a.nii.gz

Leuven_1/sub-0050703/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050703_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Leuven_1/sub-0050703/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/ZM/jG/MD5E-s287860--8a39584aa01f168af6d73ccada1bcfd7.nii.gz/MD5E-s287860--8a39584aa01f168af6d73ccada1bcfd7.nii.gz

Leuven_1/sub-0050703/mri/Tian_Subcortex_S2_7T_sub-0050703_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Leuven_1/sub-0050703/mri/Tian_Subcortex_S2_7T_sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4p/kq/MD5E-s25047--3475fedecbb89e9eff38ca0c13563e0a.nii.gz/MD5E-s25047--3475fedecbb89e9eff38ca0c13563e0a.nii.gz

Leuven_1/sub-0050703/mri/aal3_sub-0050703_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Leuven_1/sub-0050703/mri/aal3_sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J8/m8/MD5E-s202435--43add702697d6b9f4ca3b07faf60ff0e.nii.gz/MD5E-s202435--43add702697d6b9f4ca3b07faf60ff0e.nii.gz

Leuven_1/sub-0050703/mri/anatomy3_sub-0050703_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Leuven_1/sub-0050703/mri/anatomy3_sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5P/Zg/MD5E-s147577--1d1392b52fb5a5b4586a917ba955fc81.nii.gz/MD5E-s147577--1d1392b52fb5a5b4586a917ba955fc81.nii.gz

Leuven_1/sub-0050703/mri/anon_misub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/MK/5K/MD5E-s6240923--d4e8b9b893060e5300d057c22635a9cc.nii.gz/MD5E-s6240923--d4e8b9b893060e5300d057c22635a9cc.nii.gz

Leuven_1/sub-0050703/mri/anon_msub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/QX/KM/MD5E-s12828801--4235826751b90d7580b09779a9ee47e4.nii.gz/MD5E-s12828801--4235826751b90d7580b09779a9ee47e4.nii.gz

Leuven_1/sub-0050703/mri/cat_sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/66/pZ/MD5E-s105989--467167161e10d771bdc3abbc9c44e599.nii.gz/MD5E-s105989--467167161e10d771bdc3abbc9c44e599.nii.gz

Leuven_1/sub-0050703/mri/cobra_sub-0050703_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Leuven_1/sub-0050703/mri/cobra_sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XM/12/MD5E-s49950--99e479d8b649451656a90949543ebec9.nii.gz/MD5E-s49950--99e479d8b649451656a90949543ebec9.nii.gz

Leuven_1/sub-0050703/mri/hammers_sub-0050703_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Leuven_1/sub-0050703/mri/hammers_sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F8/km/MD5E-s157837--6d2a53624216a5f9d03ffc9834348724.nii.gz/MD5E-s157837--6d2a53624216a5f9d03ffc9834348724.nii.gz

Leuven_1/sub-0050703/mri/ibsr_sub-0050703_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Leuven_1/sub-0050703/mri/ibsr_sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Kw/F1/MD5E-s164055--4c9b61519cab699ecbbefcb1bf646e15.nii.gz/MD5E-s164055--4c9b61519cab699ecbbefcb1bf646e15.nii.gz

Leuven_1/sub-0050703/mri/it_sub-0050703_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/PF/2M/MD5E-s282--2189f285b8339e58ca0b7da424554564.mat/MD5E-s282--2189f285b8339e58ca0b7da424554564.mat

Leuven_1/sub-0050703/mri/it_sub-0050703_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/GG/gX/MD5E-s283--971634c7b87215c3527f1e1fbbc1e150.mat/MD5E-s283--971634c7b87215c3527f1e1fbbc1e150.mat

Leuven_1/sub-0050703/mri/iy_sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/j6/v0/MD5E-s42716262--86db090afe256f4947175d8e0ec98f1f.nii.gz/MD5E-s42716262--86db090afe256f4947175d8e0ec98f1f.nii.gz

Leuven_1/sub-0050703/mri/julichbrain_sub-0050703_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

Leuven_1/sub-0050703/mri/julichbrain_sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9f/1q/MD5E-s217192--867ccbd11481d18c49d27669462147c4.nii.gz/MD5E-s217192--867ccbd11481d18c49d27669462147c4.nii.gz

Leuven_1/sub-0050703/mri/lpba40_sub-0050703_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Leuven_1/sub-0050703/mri/lpba40_sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/k5/1G/MD5E-s156941--00a36b2ab6feafeae3128c8b37ae18b1.nii.gz/MD5E-s156941--00a36b2ab6feafeae3128c8b37ae18b1.nii.gz

Leuven_1/sub-0050703/mri/m0wp1sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mv/38/MD5E-s2611600--0d65293c15d7397df19f65939760cb18.nii.gz/MD5E-s2611600--0d65293c15d7397df19f65939760cb18.nii.gz

Leuven_1/sub-0050703/mri/m0wp2sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/VX/qf/MD5E-s2314243--6e966416d6590a2c151f68ba9b3cf108.nii.gz/MD5E-s2314243--6e966416d6590a2c151f68ba9b3cf108.nii.gz

Leuven_1/sub-0050703/mri/m0wp3sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/8w/m6/MD5E-s2554757--37070142cf7dc6a463f5c0043dd10d74.nii.gz/MD5E-s2554757--37070142cf7dc6a463f5c0043dd10d74.nii.gz

Leuven_1/sub-0050703/mri/mori_sub-0050703_T1w.csv

@@ -0,0 +1 @@
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Leuven_1/sub-0050703/mri/mori_sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vq/k1/MD5E-s185000--63e85ca246a277dd8ea2c8952341e7e3.nii.gz/MD5E-s185000--63e85ca246a277dd8ea2c8952341e7e3.nii.gz

Leuven_1/sub-0050703/mri/mwp1sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6w/9z/MD5E-s2614870--3cee9e963e324e690e04456b36eb5c82.nii.gz/MD5E-s2614870--3cee9e963e324e690e04456b36eb5c82.nii.gz

Leuven_1/sub-0050703/mri/mwp2sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/6F/45/MD5E-s2310573--ad7b785e006feae2c146cd41c51356de.nii.gz/MD5E-s2310573--ad7b785e006feae2c146cd41c51356de.nii.gz

Leuven_1/sub-0050703/mri/mwp3sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050703/mri/neuromorphometrics_sub-0050703_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

Leuven_1/sub-0050703/mri/neuromorphometrics_sub-0050703_T1w.nii.gz

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Leuven_1/sub-0050703/mri/p0sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/v0/p1/MD5E-s660919--4811434623540b243bd7a58b531584ea.nii.gz/MD5E-s660919--4811434623540b243bd7a58b531584ea.nii.gz

Leuven_1/sub-0050703/mri/p1sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050703/mri/p2sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050703/mri/p3sub-0050703_T1w.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050703/mri/rp1sub-0050703_T1w_affine.nii.gz

@@ -0,0 +1 @@
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Leuven_1/sub-0050703/mri/rp2sub-0050703_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/5p/mx/MD5E-s308606--8ab51243f11ca459101b45359408a27c.nii.gz/MD5E-s308606--8ab51243f11ca459101b45359408a27c.nii.gz

Leuven_1/sub-0050703/mri/rp3sub-0050703_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/wQ/vQ/MD5E-s313227--0b0c2c4f55899c445e06fb900e1fed7a.nii.gz/MD5E-s313227--0b0c2c4f55899c445e06fb900e1fed7a.nii.gz

Leuven_1/sub-0050703/mri/t_sub-0050703_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/WX/QJ/MD5E-s284--71f516bb1288a99c2969a0afe2de04b7.mat/MD5E-s284--71f516bb1288a99c2969a0afe2de04b7.mat

Leuven_1/sub-0050703/mri/t_sub-0050703_T1w_rigid_reorient.mat

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+../../../.git/annex/objects/Zq/zP/MD5E-s284--4ec168b15acc7210b1b73a2f80b867ec.mat/MD5E-s284--4ec168b15acc7210b1b73a2f80b867ec.mat

Leuven_1/sub-0050703/mri/thalamus_sub-0050703_T1w.csv

@@ -0,0 +1 @@
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Leuven_1/sub-0050703/mri/thalamus_sub-0050703_T1w.nii.gz

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Leuven_1/sub-0050703/mri/wj_sub-0050703_T1w.nii.gz

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Leuven_1/sub-0050703/mri/wmisub-0050703_T1w.nii.gz

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Leuven_1/sub-0050703/mri/wmsub-0050703_T1w.nii.gz

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Leuven_1/sub-0050703/mri/wp0sub-0050703_T1w.nii.gz

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Leuven_1/sub-0050703/mri/wp1sub-0050703_T1w.nii.gz

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Leuven_1/sub-0050703/mri/wp2sub-0050703_T1w.nii.gz

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