[DATALAD RUNCMD] Compute KKI/sub-0050776

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "496fecdf-43d2-4679-8947-92d2ed4abdeb",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/ABIDE/KKI/sub-0050776/anat/sub-0050776_T1w.nii.gz"
 ],
 "outputs": [
  "KKI/sub-0050776"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

KKI/sub-0050776/label/catROI_sub-0050776_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/MW/11/MD5E-s61324--4de6c9f4c6360519fade2a11b8a54aa9.mat/MD5E-s61324--4de6c9f4c6360519fade2a11b8a54aa9.mat

KKI/sub-0050776/label/catROI_sub-0050776_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/58/xP/MD5E-s188936--f6016de56bb3a39e819570d9db5dc901.xml/MD5E-s188936--f6016de56bb3a39e819570d9db5dc901.xml

KKI/sub-0050776/label/catROIs_sub-0050776_T1w.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/JM/47/MD5E-s120251--f13a680a8dbc748deadf220cf9393a2a.mat/MD5E-s120251--f13a680a8dbc748deadf220cf9393a2a.mat

KKI/sub-0050776/label/catROIs_sub-0050776_T1w.xml

@@ -0,0 +1 @@
+../../../.git/annex/objects/fj/z6/MD5E-s332168--5513399fda4b65949153f1df51d87c9b.xml/MD5E-s332168--5513399fda4b65949153f1df51d87c9b.xml

KKI/sub-0050776/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050776_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

KKI/sub-0050776/mri/Schaefer2018_100Parcels_17Networks_order_sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fM/w4/MD5E-s184855--176eee81982d08be7102bfaa8877c62e.nii.gz/MD5E-s184855--176eee81982d08be7102bfaa8877c62e.nii.gz

KKI/sub-0050776/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050776_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

KKI/sub-0050776/mri/Schaefer2018_200Parcels_17Networks_order_sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KP/0F/MD5E-s206121--bb38662cd5213533db59ab03d30ef892.nii.gz/MD5E-s206121--bb38662cd5213533db59ab03d30ef892.nii.gz

KKI/sub-0050776/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050776_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

KKI/sub-0050776/mri/Schaefer2018_400Parcels_17Networks_order_sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Q8/1g/MD5E-s264910--a87ae2411975343d2ca224416ade6d17.nii.gz/MD5E-s264910--a87ae2411975343d2ca224416ade6d17.nii.gz

KKI/sub-0050776/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050776_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

KKI/sub-0050776/mri/Schaefer2018_600Parcels_17Networks_order_sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/P0/Q4/MD5E-s294567--dded14e0b98cd4314c5019282a987bb5.nii.gz/MD5E-s294567--dded14e0b98cd4314c5019282a987bb5.nii.gz

KKI/sub-0050776/mri/Tian_Subcortex_S2_7T_sub-0050776_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

KKI/sub-0050776/mri/Tian_Subcortex_S2_7T_sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/mp/Xg/MD5E-s26949--6dfc90ed9c88fcb10c5cb553f0272505.nii.gz/MD5E-s26949--6dfc90ed9c88fcb10c5cb553f0272505.nii.gz

KKI/sub-0050776/mri/aal3_sub-0050776_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

KKI/sub-0050776/mri/aal3_sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/x2/40/MD5E-s205443--b3ea0107aa80d0958d9e96a53abce28c.nii.gz/MD5E-s205443--b3ea0107aa80d0958d9e96a53abce28c.nii.gz

KKI/sub-0050776/mri/anatomy3_sub-0050776_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

KKI/sub-0050776/mri/anatomy3_sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/v1/jQ/MD5E-s149239--90aa1acb13c9c367e37f33e57f22a550.nii.gz/MD5E-s149239--90aa1acb13c9c367e37f33e57f22a550.nii.gz

KKI/sub-0050776/mri/anon_misub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/qp/71/MD5E-s4349946--31c4fb42cd6ec13a630be9b0cb1150e3.nii.gz/MD5E-s4349946--31c4fb42cd6ec13a630be9b0cb1150e3.nii.gz

KKI/sub-0050776/mri/anon_msub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/V2/V8/MD5E-s12649241--bf365e566de44e756333d1d66749b585.nii.gz/MD5E-s12649241--bf365e566de44e756333d1d66749b585.nii.gz

KKI/sub-0050776/mri/cat_sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/jf/px/MD5E-s110321--95e9f9b368e393dafda06762739fc2e9.nii.gz/MD5E-s110321--95e9f9b368e393dafda06762739fc2e9.nii.gz

KKI/sub-0050776/mri/cobra_sub-0050776_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

KKI/sub-0050776/mri/cobra_sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/KZ/1G/MD5E-s53569--6843a6b0d8dea6729bfa470221247a00.nii.gz/MD5E-s53569--6843a6b0d8dea6729bfa470221247a00.nii.gz

KKI/sub-0050776/mri/hammers_sub-0050776_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

KKI/sub-0050776/mri/hammers_sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/1w/Z5/MD5E-s160190--47b914dab65c19bae41f62b77b08503f.nii.gz/MD5E-s160190--47b914dab65c19bae41f62b77b08503f.nii.gz

KKI/sub-0050776/mri/ibsr_sub-0050776_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

KKI/sub-0050776/mri/ibsr_sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9Z/4Z/MD5E-s166094--555f884a85a2fc56548fbb2a53dbd847.nii.gz/MD5E-s166094--555f884a85a2fc56548fbb2a53dbd847.nii.gz

KKI/sub-0050776/mri/it_sub-0050776_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/f9/Mw/MD5E-s283--9e939652413fc8686ab0bd0ad1172fd6.mat/MD5E-s283--9e939652413fc8686ab0bd0ad1172fd6.mat

KKI/sub-0050776/mri/it_sub-0050776_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/8x/Mq/MD5E-s283--9718a6e2e41e366a250f91c861e7be43.mat/MD5E-s283--9718a6e2e41e366a250f91c861e7be43.mat

KKI/sub-0050776/mri/iy_sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/F1/VP/MD5E-s44037481--20e15069d51a33b205118b0f5db46243.nii.gz/MD5E-s44037481--20e15069d51a33b205118b0f5db46243.nii.gz

KKI/sub-0050776/mri/julichbrain_sub-0050776_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

KKI/sub-0050776/mri/julichbrain_sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Pm/74/MD5E-s218727--d9a78e017a7eb375e1ff2541ac0ae0d5.nii.gz/MD5E-s218727--d9a78e017a7eb375e1ff2541ac0ae0d5.nii.gz

KKI/sub-0050776/mri/lpba40_sub-0050776_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

KKI/sub-0050776/mri/lpba40_sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/3Z/K6/MD5E-s158595--ddfc4065d827c783c84719d17c3f3c57.nii.gz/MD5E-s158595--ddfc4065d827c783c84719d17c3f3c57.nii.gz

KKI/sub-0050776/mri/m0wp1sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m9/Qm/MD5E-s2611356--f079fdf3aaf94f1796ad35b4dbbe4eb2.nii.gz/MD5E-s2611356--f079fdf3aaf94f1796ad35b4dbbe4eb2.nii.gz

KKI/sub-0050776/mri/m0wp2sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/XM/Mv/MD5E-s2305004--0136f97a9ddd88fec97be0b069495081.nii.gz/MD5E-s2305004--0136f97a9ddd88fec97be0b069495081.nii.gz

KKI/sub-0050776/mri/m0wp3sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9V/83/MD5E-s2654485--967219b75327d1784f749cbabc805083.nii.gz/MD5E-s2654485--967219b75327d1784f749cbabc805083.nii.gz

KKI/sub-0050776/mri/mori_sub-0050776_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

KKI/sub-0050776/mri/mori_sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050776/mri/mwp1sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/K9/Vm/MD5E-s2617628--24c5e2f9636cececb6b248e6b96b2ff0.nii.gz/MD5E-s2617628--24c5e2f9636cececb6b248e6b96b2ff0.nii.gz

KKI/sub-0050776/mri/mwp2sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/J5/Fk/MD5E-s2313775--9a89358a265cd0e2363d6bd6f31e1f16.nii.gz/MD5E-s2313775--9a89358a265cd0e2363d6bd6f31e1f16.nii.gz

KKI/sub-0050776/mri/mwp3sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Zq/gv/MD5E-s2654021--66f39c086fa2bb7925224756ab41e8f1.nii.gz/MD5E-s2654021--66f39c086fa2bb7925224756ab41e8f1.nii.gz

KKI/sub-0050776/mri/neuromorphometrics_sub-0050776_T1w.csv

@@ -0,0 +1 @@
+../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

KKI/sub-0050776/mri/neuromorphometrics_sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/4M/PK/MD5E-s216420--23bc28fbabe7d327f934aadd39ed9d42.nii.gz/MD5E-s216420--23bc28fbabe7d327f934aadd39ed9d42.nii.gz

KKI/sub-0050776/mri/p0sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/zm/x5/MD5E-s644537--a0499696685c69ea1b1bec4b82e60274.nii.gz/MD5E-s644537--a0499696685c69ea1b1bec4b82e60274.nii.gz

KKI/sub-0050776/mri/p1sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/fx/QK/MD5E-s686281--e923c6216f35fb4497e75fd1aaa03489.nii.gz/MD5E-s686281--e923c6216f35fb4497e75fd1aaa03489.nii.gz

KKI/sub-0050776/mri/p2sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/m9/f8/MD5E-s451517--45def81234cee079e417a894567b6a8a.nii.gz/MD5E-s451517--45def81234cee079e417a894567b6a8a.nii.gz

KKI/sub-0050776/mri/p3sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050776/mri/rp1sub-0050776_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/9f/wq/MD5E-s464855--b0bb944678295b7b4f25e16fcda88120.nii.gz/MD5E-s464855--b0bb944678295b7b4f25e16fcda88120.nii.gz

KKI/sub-0050776/mri/rp2sub-0050776_T1w_affine.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050776/mri/rp3sub-0050776_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/Xj/Fp/MD5E-s303455--678c93cabac355e99d96383fe1d729bb.nii.gz/MD5E-s303455--678c93cabac355e99d96383fe1d729bb.nii.gz

KKI/sub-0050776/mri/t_sub-0050776_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/WV/GJ/MD5E-s283--4eafa74246bdadb0dad2b7b752d80d19.mat/MD5E-s283--4eafa74246bdadb0dad2b7b752d80d19.mat

KKI/sub-0050776/mri/t_sub-0050776_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../.git/annex/objects/f8/4g/MD5E-s283--bfcd0f8acc5a577589e1fe83c06a6c65.mat/MD5E-s283--bfcd0f8acc5a577589e1fe83c06a6c65.mat

KKI/sub-0050776/mri/thalamus_sub-0050776_T1w.csv

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KKI/sub-0050776/mri/thalamus_sub-0050776_T1w.nii.gz

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KKI/sub-0050776/mri/wj_sub-0050776_T1w.nii.gz

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KKI/sub-0050776/mri/wmisub-0050776_T1w.nii.gz

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KKI/sub-0050776/mri/wmsub-0050776_T1w.nii.gz

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KKI/sub-0050776/mri/wp0sub-0050776_T1w.nii.gz

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KKI/sub-0050776/mri/wp1sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050776/mri/wp2sub-0050776_T1w.nii.gz

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KKI/sub-0050776/mri/wp3sub-0050776_T1w.nii.gz

@@ -0,0 +1 @@
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KKI/sub-0050776/mri/y_sub-0050776_T1w.nii.gz

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